Chryseobacterium sp. JV274: CHRYMOREF3P_3206
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Entry
CHRYMOREF3P_3206 CDS
T08877
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chrj
Chryseobacterium sp. JV274
Pathway
chrj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHRYMOREF3P_3206 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrj03400
]
CHRYMOREF3P_3206 (mfd)
Enzymes [BR:
chrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHRYMOREF3P_3206 (mfd)
DNA repair and recombination proteins [BR:
chrj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHRYMOREF3P_3206 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
CAD0222931
UniProt:
A0A7U7HF53
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All DBs
Position
I:3372496..3375864
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AA seq
1122 aa
AA seq
DB search
MQLKSIKEKFLPDLMQKEFGKEIFTQLENSQHIAVKGSAGSSVSIFVAELFLVQKKNILY
LVDDKEDALYANTEMEDLIGKDKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGRS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLTHYHFQQADFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVESIKTFDIETQLSIDKVKDFQLVSNMNFSVTGS
RVSLLQLLPNESFVVSKNGMIGMQKIRTFYEKSLEKYDTLSKDIAHRTPQELFISDQEFL
FDYKKFRTVDFGGAVIEGLKEITEVKMEQLPQPSFHKNFELLIEDIEEKQNSGFDTWISF
STEKQKERLESIFEELEHELPFKSFKSELHEGFVDNGHKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGREIVLSKLGSPTWKSLKQKTKAKVKQIAFDLIQLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATVDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNVGYINRFRTAKQKSETLDALKNG
KVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFNEEILRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFESLFENEEDR
QKLFKSVKDVNIDTDLELMLPDFYISNTEERLLLYQKIAEINNEVDLHQFELELIDRFGA
LPKEAVNLLKSVSLKWLAADIGFEKIVMKNGVFLGYFPGNPQDKFYQTDRFRHIINYLTR
NPAEAQLKEKSGKEGNQLMMRKEKVKNVDEVNILLKAIIEHN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaaatccatcaaagaaaagtttcttccagatctgatgcagaaagagttcggg
aaagaaattttcacccagttagaaaacagccagcatattgccgtaaagggaagtgcggga
tcttcagtttctatttttgtggctgaactttttttagttcaaaagaaaaatattctttat
ctggtagatgataaagaggatgcattgtatgccaatactgaaatggaagatcttattggc
aaagataaggtgttgtattttccagccacccatcttgagccttatcaggtagaaaaaaca
caaaatgctaatctggttttaagaactgaagttttaaataaaatcaattcagggagatct
ccgaaagttattgtagcttatgccggagctttgtctgaaaaggttttgaaaaaagaagat
tttaaagccatctctcatcatataaaagtaggtgaccagctggacttcgattttgtagac
gaattgctcacccattaccattttcagcaggccgattttgtttcagaaccgggagaattt
tctgtaagagggggaattgtagatgtattttcttattcatacgaaaagccatataggatt
acattctttgggaatgaagtggaaagtattaaaacttttgatatcgaaacccagctttct
atagataaagtaaaggattttcaattggtttccaatatgaatttctctgtgacaggaagc
agagtgtcattgttacagctgttgccaaacgaaagttttgtagtttctaaaaatggaatg
ataggaatgcagaagatcaggacgttctatgagaagtccctggaaaaatatgatacttta
agtaaagatattgctcacagaactcctcaggaactttttatttctgatcaggagttttta
ttcgattataaaaaattcagaacagttgattttggtggggcagtaattgaaggattgaag
gaaattactgaagtcaaaatggagcagctccctcagccgtcttttcataaaaactttgaa
ctgctgattgaagatatcgaagaaaaacagaacagcggatttgatacgtggatttccttt
tcaacagaaaaacagaaagaaagactcgaatctatttttgaagaacttgaacatgaactt
ccttttaagagctttaaatctgagctgcatgagggatttgtggacaacggtcacaagctt
cttgtttatactgaccaccagatctttgaccgttatcagagatataaggcaaagaatact
tttgcaaaatcagagcagcttaccctgaaagacctgatgtctttgaaaataggtgactat
attgcccatattgaccacgggatcggaaaatttatggggctggtaaaagtaaataatgat
ggtaagattcaggaatgttttaaactgacttataaaaacggagacttattatatgtaagt
attcactctttgcataagatttcgaaatacaatggaccggatggaagagagattgtgctg
agcaaacttggttctccaacctggaaatctttgaaacaaaaaacaaaagcgaaggtaaag
caaattgcttttgatcttattcaattatacgcacagcgaaagacggcaaaaggttttgct
tatacaccggattcttatcttcagaatgaactggaggccagctttatctacgaggatact
ccggatcaggaaaaagcaaccgtagatgtaaagaaagatatggaggctgatacggttatg
gacaggctggtttgtggtgatgtaggtttcggtaaaacggaagttgcaatccgtgcagca
tttaaggcggccacagacggtaaacaggttgcaatattagttcccacaactattcttgct
tttcagcactacaggagttttaaagaaagacttaaagattttcctgtaaatgttggttat
ataaaccgattcagaacagcgaagcaaaaatcagaaactttagatgctttaaagaatgga
aaagtagatattatcattgggacacaccagctggtaagcagttctgtgaagtttaaagat
ctgggcctgctgattattgatgaagaacataagtttggagtttcagtaaaggataagttg
aaaacgcttaaaagtaatgttgatacgcttacccttacagcgactcctattccaaggact
ttacagttttcattaatggcggcaagggatttatctgtcatcaaaacaccaccacctaac
agacagcctgtagatacgcaattgatcggattcaatgaagagattcttcgtgatgccgtt
tcttatgagcttcagagggatggtcaggtttatttcattaataacagaatagaaaacctt
aaagatattgccggacttattcagagactggttccggatgcaagagtgatcacaggacat
ggtcagatggaaggaaagcagctggagaagaatgttctggattttatggaaggaaaatat
gatgttctagtgtccacgacaattgtagaaagtggtgtggatgtcccgaatgccaatacc
attttcatcaatgatgcacagcggtttggaatggcagatctgcatcagatgagaggaagg
gtaggacgtagtaacagaaaggcattctgctatctgattacaccaccttatgatatgatg
acttccgatgccagaaaacgtctggaagccattgagcagttttctgatctgggaagtggt
ttccagattgcaatgaaagaccttgaaatccgtggtgccggtgaccttttgggtgctgaa
caaagcgggttcatcaatgaaatggggtttgaaacatatcagaaactaatgcaggaagcg
ctggaagaactgaaagatgatgctgactttgaaagtctgtttgaaaacgaggaagacaga
caaaagctcttcaaatctgtaaaagatgtcaatatcgatactgacctggaattgatgtta
cctgatttctatatttccaataccgaagaaagattactgctgtaccagaaaattgcagaa
attaataatgaagttgatcttcatcagtttgaacttgagctgattgaccgttttggagca
ttgccgaaagaagccgtcaatctattgaaaagcgtttctctgaaatggttagccgcagat
ataggttttgagaagattgttatgaaaaatggagtattcttaggatacttcccagggaat
cctcaggataaattctaccagacagatagattcagacatattattaattatttaacccga
aatcctgccgaagcccagcttaaagagaaatccggaaaagaaggtaatcagctgatgatg
aggaaggaaaaggtgaaaaatgtggatgaggttaatatattattaaaagctattattgaa
cataattaa
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