Chromobacterium paludis: FYK34_01350
Help
Entry
FYK34_01350 CDS
T06224
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chrm
Chromobacterium paludis
Pathway
chrm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FYK34_01350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrm03400
]
FYK34_01350
Enzymes [BR:
chrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FYK34_01350
DNA repair and recombination proteins [BR:
chrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FYK34_01350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QEL54317
UniProt:
A0A5C1DEJ3
LinkDB
All DBs
Position
complement(273485..276877)
Genome browser
AA seq
1130 aa
AA seq
DB search
MDTLPPLPPAGQKTRCGRLPDGLDSHAIAALAQQGRPLLILAADAQAAQRLKAELPFFAP
GLTIALFPDWETLPYDHFSPHGDLVSERLATLWQIRQRECQVVIAPVSTALSRLAPVSYL
LGRTFFLKTGQQLDVEKLRGDMVSAGYQHVTQVMAPGEFSVRGSLIDLYPMGSPLPYRID
LFDAEIDSLKTFDPDTQRTLYPVPEIRMLPAREYPADETGVTAFRQHYREKMEGDPSKSR
VYKDVSQGLWPAGIEYYLPLFFDETATLFDYVGDDALVIQHHDVQAAAETFWRDAQGRYD
MARGDVERPVLAPADIFLRPDELMATLKPYPRIEFSGEGDIAAALPELAVDRRADAPLHK
LQSFIAAGGRRILLAAESLGRRETMLSFLAEHGVKPTPVDNWADFMAGKTPLALTVAPLY
SGFALADPAIAVVTESELYQHVARSHTRRKTSRASSDAMLRDLAEVKAGDPVVHEAHGIG
RYIGLVAMDLGEGETELMQLEYADGATLYVPVSQLQLISRYAGGATDNIQLHKLGNPAWE
KAKKRAAEKARDTAAELLNLYAQRAAREGHSFELSPADYSAFAAGFGFEETPDQATAIEA
VIQDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPTTLLAEQHFQNFSD
RFADWPVRIAELSRFKSGKETKQALQGLTDGSVDIVIGTHKLVQPDIQFKNLGLVIIDEE
HRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAIATAPSRRLAVKTFVS
PLSNGVIREAVLRELKRGGQVFFLHNEVDTIENMREKLAELIPEARIGVAHGQLRERELE
QVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHQAY
AYLLTPDGMTRDAQKRLEAIQLSGELGAGFYLAMHDLEIRGAGEVLGEGQSGEMQEVGFS
LFTEMLKQAVRDLKKGRAPDLDAPLGVTTEINLHSPALLPDGYCPDVHERLLIYKRLASC
ETEAEIDDIHEELIDRFGLPPQSVKTLIESHRLRLAAKELGVQKLDASEVAVQITFIKNP
PIDPVKIILLIQSKKNYRLAGQDKLRVEQALPEVAQRIVKVKEVLKELSA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
ttggatacgctaccgcccctgccgcccgccggccagaaaacccgctgcggccgcctgccc
gacggcctggacagccatgccatcgccgcgctggcccagcaaggccgccctttgctgatt
ctcgccgccgacgcccaggccgcgcagcgcctgaaggccgagctgccgttcttcgcgccc
ggcctaaccatcgcgctgttcccggactgggaaaccctgccttacgaccacttctcgccg
cacggcgacctggtcagcgaacggctggccacgctgtggcaaatccgccagcgcgaatgc
caggtggtgatcgcgccggtcagcaccgcgctgagccgcttggcgccggtcagctatctg
ctgggccgcacctttttcctgaagaccggccaacagctggacgtggaaaagctgcgcggc
gacatggtgtccgccggctaccagcacgtgacccaggtgatggcgccgggcgaattctcg
gtgcgcggcagcctgatcgatctgtatccgatgggctcgccgctgccgtaccggatcgac
ctgttcgacgccgagatcgacagcctgaaaaccttcgatccggacacccagcgcacgctg
tacccggtgcccgagatccgcatgctgccggcgcgcgaatacccggccgacgagaccggc
gtcaccgccttccgccagcattaccgcgagaagatggaaggcgacccgagcaagagccgc
gtctacaaggacgtgtcgcaaggcctgtggccagccggcatcgagtactacctgccgctg
ttctttgacgaaaccgccaccttgttcgactacgtcggcgacgacgcgctggtgatccag
caccacgacgtgcaggcggcggcggaaaccttctggcgcgacgcgcaaggccgctacgac
atggcccgcggcgacgtcgagcgcccggtgctggcgcctgccgacatcttcctgcgcccg
gacgagctgatggccacgctcaagccctacccccgcatcgaattctccggcgaaggcgac
atcgccgccgcgctgccggagctggccgtggaccgccgcgccgacgcgccgctgcataaa
ttgcaaagcttcatcgccgccggcggccgccgcatcctgctggcggcggaaagcctgggc
cgccgcgaaaccatgctgagcttcctggccgaacacggcgtcaagccgacgccggtggac
aactgggccgacttcatggccggcaagacgccgctggcgctgaccgtcgcgccgctctac
tccggcttcgccctggccgatccggccatcgccgtggtgaccgagagcgagctgtaccag
cacgtcgcccgcagccacacccgccgcaagaccagccgcgccagctccgacgccatgctg
cgcgacctggccgaggtgaaggccggcgacccggtagttcacgaggcgcacggcatcggc
cgctacatcggcctggtggccatggacctgggcgagggcgaaaccgagctgatgcagctg
gagtacgccgacggcgccacgctgtacgtgccggtgtcgcagctgcagctgatctcccgc
tacgccggcggcgccaccgacaacatccagttgcacaagctgggcaacccggcctgggaa
aaggccaagaagcgcgcggcggaaaaagcgcgcgacaccgccgccgagctgctgaacctg
tacgcccagcgcgccgcgcgcgagggccacagcttcgagctgtcccccgccgattacagc
gccttcgccgccggtttcggcttcgaggagacgccggaccaggccaccgccatcgaagcg
gtgatccaggacatgtgctccggcaagccgatggaccggctggtctgcggcgacgtcggc
ttcggcaagaccgaagtggcgctgcgcgccgccttcgtcgcggtgatgggcggcaaacag
gtggcggtgctggtgcccaccacgctcttggccgaacagcacttccagaacttctccgac
cgcttcgccgactggccggtgcgcatcgccgagctgtcgcgcttcaagagcggcaaggaa
accaagcaagccttgcaaggactgaccgacggcagcgtcgacatcgtcatcggcacccac
aagctggtgcagccggatatccagttcaagaacctgggcctggtcatcatcgacgaggag
catcgtttcggcgtgcggcagaaggagcagctgaaacggctgcgcgccaatgtggacgtg
ctgacgctgaccgcgacgccgattccgcgcacgctgtcgatggcgctggaaggcctgcgc
gacttctccgccatcgccaccgcccccagccgccggctggcggtcaaaaccttcgtcagc
cccttgagcaacggcgtgatccgcgaggcggtattgcgcgagctgaagcgcggcggccag
gtgttcttcctgcacaatgaagtcgacaccatcgaaaacatgcgggaaaagctggccgag
ctgatcccggaggcgcgcatcggcgtggcccatggccagctgcgcgagcgcgagctggag
caggtgatgcgcgacttcctgcagcagcgcttcaacctgctgttgtgctccaccatcatc
gaaaccggcatcgacatccccaacgccaacaccatcctgatcaaccgcgccgacaagttc
ggcctggcgcagctgcaccagctgcgcggccgcgtcggccgctcccaccaccaggcctac
gcttatctgttgacgccggacggcatgacccgcgacgcgcaaaaacgcctggaagcgatc
cagctgtccggcgaactcggcgccggcttctatctggcgatgcacgacctggaaatccgc
ggcgccggcgaagtgctgggcgaaggccagtccggcgagatgcaggaagtgggcttcagc
ctgttcaccgagatgctgaagcaggcggtgcgcgatctgaaaaagggccgcgcgccggac
ctggacgcgcccctgggcgtcaccaccgaaatcaatctgcacagcccggcgctgctgccg
gacggctattgcccggacgtgcacgagcggctgctgatttacaaacgcctggccagctgc
gagaccgaggcggagatcgacgacatccacgaagagctgatcgaccgcttcggcctgccg
ccgcagagcgtgaagacgctgatcgaaagccatcgcctgcgcttggcagccaaggagctg
ggggtgcaaaagctggacgccagcgaggtggcggtgcagatcaccttcatcaagaacccg
cctatcgatccggtgaagatcatcctgctgatccagagcaagaagaattaccgcttggcc
gggcaagacaagctgcgcgtcgagcaggcgctgccagaggtggcgcagcggatcgtgaag
gtgaaggaggtgttgaaggagttgagcgcgtag
DBGET
integrated database retrieval system
