Chryseobacterium sp. T16E-39: CEY12_15825
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Entry
CEY12_15825 CDS
T04952
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
chry
Chryseobacterium sp. T16E-39
Pathway
chry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEY12_15825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chry03021
]
CEY12_15825
03019 Messenger RNA biogenesis [BR:
chry03019
]
CEY12_15825
Transcription machinery [BR:
chry03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CEY12_15825
Messenger RNA biogenesis [BR:
chry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CEY12_15825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
ASK31487
UniProt:
A0A220SDL3
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All DBs
Position
3490074..3491939
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AA seq
621 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARNSTENDKIFAVLDFQASNPKVTKDYFNTTESS
MNTEDKEVEKEIKAPAKKAAPKRTVKPKTEVKAPTETIENAEEKIEEKEIVAETPRQEEV
TASATEENLTSQQAQAKKKRKRVLPNPNTTEASAQERTEVQKNTETQKSASTEEKPGNSP
GQARPQKGHNHPQNGGNSHKNQNPNQNQNSNQGNNQNQGQNQNQGHNQNQNQNRHSDKQE
EHHESKKEFHFDGMVSIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNFGLKTG
DTVKGIVRLPKEGEKYFSLLKPTEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLTGSNSTI
STRIVDLFAPIGKGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERPEEVT
DMERSVNAEVIASTFDEAAEKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTV
TPASGKVLSGGVDANALHKPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKG
TGNMELQLDRKIANRRIYPAIDLVSSSTRRDDLLLDEVTSQRMWIFRKYLSEMNPVEAME
FVNKNIKGTLNNEEFLMSMNR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacattgaaacgttaaggtcaaaatccgtaacggaattgactaaaatcttaaag
gatttaggcgttaaagttgcaagaaatagcactgaaaatgataaaatttttgctgttctt
gattttcaagcttctaaccctaaagttacaaaagattatttcaacaccacagaaagcagt
atgaatactgaagacaaagaggtggagaaagaaattaaagcccctgccaagaaagctgct
cccaagagaacggtaaaacctaaaacggaggtaaaggctccaactgagacaatagaaaac
gctgaagagaaaatagaagaaaaagaaattgtcgctgaaactccaaggcaggaagaagtt
acagcttcagcaacagaagaaaatcttacttcgcaacaagcacaagcaaagaaaaaaaga
aaaagagttctcccaaatcctaatacgactgaagcttctgctcaggaaagaacggaagtt
caaaaaaatactgagactcagaaatctgcttcaacagaagaaaagccaggtaattctcca
ggtcaggcaagacctcaaaaaggccataatcatccacaaaacggtggaaattctcataaa
aatcagaaccccaatcaaaatcagaattcaaaccagggtaataaccaaaaccaaggtcag
aatcaaaaccaggggcataatcagaaccaaaatcaaaacagacattctgataaacaggaa
gaacatcacgagtctaaaaaagaattccattttgatgggatggtaagtatagaaggtgta
ttagaaattcttccggataactacggttttttacgttcgtcagattttagctacatttct
tctccggatgatgtgtatgtatctactgctcaaatcagaaattttggattaaagactgga
gatactgtaaaaggtatcgtaagacttccgaaagaaggcgaaaaatacttttcgttatta
aaacctacagaagttaatggacgtgatttagcatttatcaaggatagagtagcttttgaa
tatctgacgccgcttttccctgaagaaaaatttaatcttacaggaagcaattcaactatt
tctacaaggattgtagatctttttgcacctattggaaaaggacaaagagcaatgattgtt
gcacagcctaaaacaggtaaaacaatgttgcttaaagatatcgccaattctattgcagcc
aaccacccggaagtttatatgatggttcttcttatcgacgaacgtcctgaggaggtgact
gatatggaaagaagtgtaaatgcagaagtaattgcttctacatttgatgaagccgcagag
aaacatgtgaaagttgcaaatcttgttttagcaaaagctcagagaatggtggaatgcgga
catgatgtggttattttattagactccattactagactggcaagagcctataatactgtg
acaccagcttcaggaaaagttctttcaggaggtgtagatgctaatgctttacataaaccg
aaaagattctttggagcagcaagaaaaattgaaggcggaggttctttaacaattattgcg
acagctcttatcgatacaggttctaaaatggatgaagttatctttgaagaatttaaagga
accggtaacatggagcttcaattggacagaaaaattgccaatagaaggatttatccggct
atcgatcttgtttcttccagcacgagaagagatgacttacttcttgatgaagtaacttct
cagagaatgtggatcttcagaaaatacctttctgaaatgaatcctgtggaagctatggaa
tttgtaaataaaaacatcaaaggaactcttaataatgaagaattcctgatgtctatgaat
agatag
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