Chryseobacterium sp. 6424: CO230_06485
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Entry
CO230_06485 CDS
T05704
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chrz
Chryseobacterium sp. 6424
Pathway
chrz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CO230_06485 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrz03400
]
CO230_06485 (ligD)
Enzymes [BR:
chrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CO230_06485 (ligD)
DNA repair and recombination proteins [BR:
chrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CO230_06485 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AYO57801
UniProt:
A0A3G2TCP9
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All DBs
Position
1382563..1384419
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AA seq
618 aa
AA seq
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MLCGSKDKPFSSPDWIFEIKWDGYRAIADLRKEIQFYSRNGISYLEKFRKIANSLRLQQN
EMILDGELVAYDDEGKPNFQWLQQIGDKPNLNVIFQVFDLLWLNGHSTEELTLLQRKELL
KEALVETEFIKYHDHVLENGEKFFQLIEKMGLEGMIAKKTDSVYQRGARTGDWLKIKKQH
TADVLICGFTAPKGTRKKFGSLILGRYDDGELVFCGHTGTGFTDKVLTELHAKMTPLIIP
ESPFAATPKTNDKPTWLKPKLIAEIKYTEITSDHIFRHPVFLHLREDLEPSDIDFVKDFK
PEAPPAPQKKTVMEKDNETLTKFGKQEVKLTNQNKVYFPKDQVTKGDVVAYYQSVAEYIL
PYLKDRPQSMNRFPNGIEGMSFYQKDASEETPDWIDTQQVYSESNDKYINYILCNDRATM
AYLNNLGCIELNVWTSRVQTIENPDYLVLDLDPSENNTFDDVIETALAVKKIADKAEIKA
FCKTSGSSGIHIYFPTGTAYTFDQVKDFAHLMMQMVQQELPEITTLERALQKRDKNKIYL
DYLQNRRGQTLASVYSLRPKKGAPVSMPLEWDEVRTGLKPTDFNIENALERIKTKGDLFK
PVLGKGFDMLKAIEALGK
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgctttgcggcagcaaagacaaacctttcagttcacccgactggatttttgaaataaaa
tgggatggttaccgcgccatcgcagaccttcggaaagagatacaattctattcccgtaat
ggtatttcgtatcttgaaaaattcaggaaaatagccaattcgcttcggttacagcaaaac
gaaatgattcttgatggggaattggtagcgtatgatgacgagggtaaacccaatttccag
tggttacagcagataggagataaaccgaatctgaatgttatcttccaggtgtttgatttg
ctttggcttaatggacactcgaccgaagaactgacgcttttacaacgaaaagaactatta
aaggaagccctggtagaaaccgagtttataaaatatcatgaccacgttctcgaaaatggc
gaaaaattctttcaactcatagaaaaaatgggcttagaaggcatgatcgccaaaaaaaca
gattccgtatatcagcgtggcgcccgaaccggcgactggctcaaaatcaagaaacaacat
acggcggatgtgctgatttgtgggtttaccgcgcctaaaggaaccaggaaaaaatttggc
tcactgatcctggggcgatacgatgatggcgaattggtattttgcggacataccggtacg
ggtttcaccgataaagtccttacagaactgcatgcgaaaatgactccgctcatcattcct
gaatcaccttttgccgcaactccgaaaaccaatgataagcctacatggctgaaacccaaa
cttatcgcggagataaaatatacagagatcacttccgatcacatcttcaggcaccctgta
tttctacatcttcgggaagatttagagcccagcgatattgattttgtcaaagattttaaa
cctgaagcaccaccggcacctcaaaaaaaaaccgtcatggaaaaagataatgaaacactt
accaaattcggtaagcaggaggtaaaactcaccaatcagaacaaagtttattttccgaaa
gatcaggtaacaaaaggcgatgtggtagcatactatcaaagcgtggccgaatatatcctg
ccttacctgaaagaccgtccacaatccatgaaccgctttcccaacggcatagaaggcatg
agtttctatcagaaagacgcttccgaggaaacaccggattggatcgatacgcagcaggta
tattccgaatctaatgataaatacatcaattacatcctttgtaatgaccgcgctacgatg
gcctatctgaacaatctcggctgtattgaactgaatgtctggacaagccgtgtgcaaact
atagagaatccggattatcttgtccttgaccttgatccctccgaaaacaatacttttgat
gacgtcatcgaaacagcgcttgccgtaaagaaaatcgctgacaaggcagaaattaaggca
ttctgcaaaacctctggcagttcaggcatccatatttattttcctaccggtactgcttat
acgtttgaccaggtgaaagatttcgcccatttaatgatgcagatggtacaacaggaactc
cccgagatcaccacattggaacgtgctttacagaaacgcgacaaaaacaagatatatctc
gattatctgcaaaaccggcgtggccaaaccttagcgagtgtctatagtttgcgcccaaag
aaaggcgcaccagtctccatgccgctggaatgggatgaagtaaggaccggtttgaaacct
accgatttcaatattgaaaatgccctggagcgtatcaaaaccaaaggtgatctgtttaaa
cctgtacttggtaaagggtttgatatgttaaaagccatcgaagccctcgggaaatag
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