Cytophaga hutchinsonii: CHU_2837
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Entry
CHU_2837 CDS
T00385
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CHU_2837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chu03400
]
CHU_2837
Enzymes [BR:
chu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CHU_2837
DNA repair and recombination proteins [BR:
chu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CHU_2837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
Tropomodulin
Glypican
Mucin
Motif
Other DBs
NCBI-ProteinID:
ABG60085
UniProt:
A0A6N4SUE3
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Position
complement(3237294..3239984)
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AA seq
896 aa
AA seq
DB search
MALETYKEKRNFKHTPEPVAKKNAAGTELKFVIQRHAASHLHYDFRLEMEGVLKSWAVPK
GPSLNPSDKRLAMMVEDHPFAYRTFHGVIPEGNYGAGIVEIWDEGTYHAIGNEDRKTGEK
ELLADLKKGNLKFVLHGKKLKGEFALVKIKNNNSSKDNAWLLIKHKDAYATEDAYSSEDY
VPANSKIVKKTAASKKPATPVSKKSAIKMVDDKPATDKKKVQSAPAQKIKQGKDPMPHEV
KPMLAKLKDAPFDSPEWIFEIKWDGYRAIAEIDQGKVELYSRNLISFTKKYKPIVESLQS
FGHNVVLDGEVIVLNADGTSSFQMLQQYDETPSPDLCYCVFDILFLDGRDLRDLPLLERK
AILKKVIPDLPNLKYSDHVEKEGIRFFELAKKNKLEGIMAKRADSIYRLGSRSDQWIKLK
IVKSQEAIICGFTAPRNSRKDFGALILGAYENGRLVYIGHTGGGFTMALLASTLKLMKPL
IQKESPFDVKIKTNEKVTWIKPKLVCAIAFSEWTSDGHMRQPIFQGMRIDKKVSEVTREL
PTVINVPQDNAMEVTRNIKQTAAKTSTKKTAHKKAASKKTTTNKKTTDVAAAENSKAGEF
KIDGQVLKISNRSKVYWPEDGYTKGDLIDYYMQAADYILPYLKDRPESLNRHPNGIDGSS
FFQKDMGDTLPDWIEAKEIFSESNSKDINYVLCQNKATLIYMANLGCIEINPWNSRVKKI
EYPDFIVIDLDPSDNNTFDEVIETALVVKKILDKGGIDAYCKTSGATGLHIYIPLGAKYT
YEQGKNFAHIIAQLTNNELPELTSLVRNPKERKKQIYVDYLQNRGGQTLAAPYSVRPKPG
ATVSTPLEWKEVKKGLHPSTFTIKTIFKRLEKKGDLFKGVLGKGIDMEKCLKKLGA
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggaaacctataaagagaaacgtaatttcaaacatacacctgaaccggtagca
aaaaaaaatgcagcaggtacggaattgaaatttgtgatacagcggcatgccgcttcacat
ctgcattatgatttcaggcttgaaatggaaggtgtattaaaaagctgggccgttccgaaa
ggtccttcattaaacccttcagacaaaagactggcgatgatggtagaggatcatcccttt
gcataccgtacatttcatggcgtaattccggaaggaaattatggtgccggtattgtagag
atctgggatgaaggcacgtatcatgccatcggaaatgaagatcgtaaaaccggtgaaaaa
gaattattggccgatcttaaaaaaggaaacctgaaatttgtactgcatggtaaaaaactc
aaaggtgaatttgccctggttaaaataaaaaataataattcatccaaagacaatgcctgg
ctgctgatcaaacacaaagatgcgtatgcaacagaagatgcttacagcagcgaagattat
gttccggcaaattctaaaattgtaaaaaaaacggctgcttctaaaaaaccggcaacacct
gtttcaaaaaaatcggctattaaaatggtagatgataaacctgcaacagataaaaaaaaa
gtacagtccgctccggcacaaaaaataaaacaaggtaaagacccgatgccgcatgaggtg
aaacccatgctggcaaaattaaaagacgcaccatttgattcaccggaatggatttttgaa
atcaagtgggatggctatcgggccattgcagaaattgatcagggtaaggtagaattgtat
tccagaaatctgatttcctttactaagaaatataaaccaattgttgagtcacttcagtca
ttcggacacaatgttgtgctggatggagaggttattgtattaaatgcagacggcacatca
agtttccagatgctgcagcagtacgatgaaactccaagtccggatctatgttactgtgtt
tttgatattctgtttctggatggccgggacctgcgggatttacccttgcttgagcgcaaa
gcaatacttaaaaaggtaatacctgatcttcccaatctgaaatatagtgaccacgttgaa
aaggaaggcatccgtttttttgaacttgcaaagaaaaataaactggaagggatcatggct
aaaagagccgatagtatttaccgccttggctcaaggtctgaccaatggatcaaacttaaa
atcgtaaaatcacaggaagcaattatctgtggttttacggccccgagaaactcacggaaa
gattttggcgcattgattttgggtgcctatgaaaatggacgactggtatatatcggccat
acgggcggaggctttacaatggcgttactggcttccacattaaaattgatgaaaccgctg
attcagaaagaatctccgtttgatgtgaaaataaaaacaaatgaaaaagtaacctggata
aaacctaagctggtatgtgcaattgctttttcagaatggacaagcgatggacatatgcgg
caaccaatttttcagggtatgcgcattgataaaaaagtcagtgaagtgacacgggaattg
cctacggttataaacgtaccacaagacaatgctatggaagtaacgcgtaacataaaacaa
acagcggcaaaaacaagcacgaaaaaaacggctcataaaaaagcagcctcaaaaaaaaca
accactaataaaaagacaacggatgttgcagctgctgaaaattcaaaggccggcgaattt
aaaatcgatggacaggttttaaaaatttcaaaccgttcaaaagtttattggccggaagat
ggttatacaaaaggcgacctgattgattattatatgcaggcagcagattatatactgcct
tatttaaaagatcgtccggagtcgttaaaccggcatccgaatggaattgacggctcaagc
ttttttcaaaaagatatgggagacacattgccggactggatcgaagctaaagaaattttt
tctgaatcaaacagcaaggatattaactacgtgctatgccagaataaagcaacattgatt
tacatggcaaatcttggctgtattgaaatcaatccgtggaactcacgtgttaaaaaaatt
gagtatccggattttattgtgattgatcttgacccaagtgataacaatacgtttgatgaa
gttattgagactgcgttagtagttaaaaagattctggataaaggagggatagatgcgtat
tgtaaaacatctggggctaccggactgcatatttatattccgttgggcgcaaaatatacg
tatgaacagggaaagaattttgcacatattatcgcgcagcttaccaataatgaattgccg
gaactaaccagtctggtacggaatccgaaagaacgcaaaaagcagatttatgtagattat
ttgcagaaccgcggcggacaaacacttgctgcgccttacagtgtaaggcctaagcctggg
gcgaccgtttcaacaccgctggaatggaaggaagttaaaaaaggattacatccatccaca
tttaccattaaaactattttcaaacgtctggagaaaaaaggagatttgtttaaaggtgta
ttaggaaaaggtattgatatggagaaatgtttgaaaaaactgggggcgtag
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