Campylobacter helveticus: CHELV3228_1294
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Entry
CHELV3228_1294 CDS
T04807
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chv
Campylobacter helveticus
Pathway
chv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHELV3228_1294 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chv03400
]
CHELV3228_1294 (mfd)
Enzymes [BR:
chv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHELV3228_1294 (mfd)
DNA repair and recombination proteins [BR:
chv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHELV3228_1294 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
TRCF
UB2H
Motif
Other DBs
NCBI-ProteinID:
ARE80874
UniProt:
A0A1V0RGG3
LinkDB
All DBs
Position
complement(1233126..1236059)
Genome browser
AA seq
977 aa
AA seq
DB search
MQASFFEYLKKGNFCELLLCENEKEADALSQVSAFFEIKTFVLPDFRAEFGDDLRAFSKE
LFELCRVLNAYHKENSKKILISPLASVLKKLPSKRHLRGFILDKTKPLNLEELKDEFLRL
GYEFVDMVQDKGELSLRGEVLDIFCINEEKPVRILFFGEEIESIRYFDLETQKSIPSELE
KLEICPFLAYFSKSAYEEFEEKLESFDSKALIKDINSLGFWCVNDFEDYLKLDLRSIKKF
DETFGENLEFINEKVLPEASVYKDLQSIYNKDFFALHQNKKIIILAQNEALFRQLELDMQ
NVFFRQSTLRLNVISGDEIILSLNKKDRKKQKRKANLILDELKVGDFIVHEDYGVGKFLG
LEMLNVSGAKKEFVALSYQNNDKLLLPVENLYMIDKYLGVGGGIPLLDRLGKSTFVKLKE
KLKTKLLALASQIIAMAAKRALVKPKELKIDFEAQADFVQKAGFSYTEDQIKACEEILED
FKSAKVMDRLLSGDVGFGKTEVAMNAIFPVLRSGFSVFFFVPTTLLSHQHYQSLKKRFDE
FNLSVFKLDRFTSAKEKKHLLEELKKNTPCVVVGTHALLSVECENVALVIIDEEHKFGVK
QKEKLKEFSQNSHLLSMSATPIPRSLNQALSSIKSYSILQTPPEDRLDVRSFVRESEDAL
LKEAILRELRRGGQIFYIHNHIASILQCEKHLKTLFKDLRILILHSKIDAKTTEEEMLKF
ENKEYDLLLCTSIVESGIDLPNVNTIIIEKSERFGMADLHQLRGRVGRGNRQGYCYFLVE
DKENLSESALKRLVSLESNSFLGAGSLLAYHDLEIRGGGNLLGLDQSGHIEQIGYSLYLR
MLEDELNALSKNESVSEDKLDLKLSINAFLNPELINEDSLRLELYRRLSKCEDSAKLYEI
EAEIEDRFGKLDVYTKQFLALIRIKILATGKFKAISNYLQNIQFTKLNDEKEVIKAKSKD
EDDILEAILVHLRKMSA
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgtctttttttgaatatctcaaaaaaggcaatttttgcgagttgttgctctgt
gaaaatgagaaagaggcggatgctctttctcaggtgagtgcattttttgagataaaaact
ttcgttttgccagattttagggcggaatttggcgatgatttacgcgctttttctaaagag
ctttttgagctttgtagagttttaaacgcctatcataaagaaaattctaaaaaaattctt
atttctcccttagcgagtgttctcaaaaaacttccgtcaaaaagacatttacggggcttt
atccttgataaaactaaacctttaaatttggaagagttaaaagatgagtttttaaggctt
ggttatgagtttgtcgatatggtgcaagataaaggtgagctttctttaaggggagaggtg
ctggatattttttgcattaatgaagaaaaacccgtgcgaattttgttttttggtgaggaa
attgaaagcattaggtattttgacttagagacacaaaaatctatcccaagtgagcttgaa
aagcttgaaatttgcccctttttggcatatttttctaaaagtgcttatgaggaatttgaa
gaaaagctagaaagctttgatagtaaggctttgattaaagatattaattctttaggcttt
tggtgtgtgaatgattttgaggattatttaaaacttgaccttagaagtataaagaaattt
gatgagacttttggtgagaatttagaatttattaatgaaaaagttttaccagaagcaagt
gtatataaggatttgcaaagcatttataataaagattttttcgccctacatcaaaataaa
aaaataattattttagcccaaaacgaagctctttttagacagcttgagctagatatgcaa
aatgttttctttaggcaaagtacattaagacttaatgtaattagtggcgatgagattata
ttatctttaaataaaaaagatagaaaaaagcaaaaacgcaaagcaaatttgattttagat
gagcttaaggttggtgattttatcgtgcatgaggattatggggtggggaaatttttaggg
cttgagatgctaaatgtttcgggggctaaaaaggaatttgttgctctttcttatcaaaat
aatgataaattgcttttgcctgtggaaaatctttatatgattgataaatatttgggcgtt
ggcggaggtattcctttgcttgataggctgggaaaaagcacttttgtcaaactaaaggaa
aagcttaaaacgaagcttttggctcttgcttcgcaaattattgctatggcggcaaaaagg
gcattggttaagccaaaagagcttaagattgactttgaggcacaagcggattttgtgcaa
aaagcgggattttcttatactgaagaccagattaaggcttgtgaggaaattttagaggat
tttaaaagtgctaaggttatggataggctgttgagcggagatgttggctttggtaaaaca
gaagtcgctatgaacgccattttcccagttttaagaagtggttttagtgtctttttcttt
gtgccaacgacacttttatcgcatcagcattatcaaagtcttaaaaagcgttttgatgag
tttaatctcagtgtttttaagcttgaccgctttactagtgctaaagaaaaaaagcatttg
cttgaagagcttaagaaaaatacgccttgcgtggttgtaggcacacacgcacttttaagc
gtggagtgtgaaaatgtcgctttagttatcattgatgaagagcataaatttggcgtaaaa
caaaaggaaaaactaaaagaattttcgcaaaattcacatcttctttcaatgtctgccacg
ccgataccaagaagtttaaatcaagctttaagctccattaaatcttatagcattttacaa
accccacctgaagataggctagatgtgagaagctttgtgagagaaagcgaggatgcttta
cttaaagaggctattttaagagagcttagaaggggtgggcaaattttttatatccataat
catatcgcaagtattttgcagtgcgaaaagcatctaaaaactctttttaaagatttgaga
attcttattttacattctaaaattgacgctaaaaccacagaggaagaaatgctaaaattt
gaaaataaagagtatgatttgcttttatgcacttccatagttgaaagtgggattgaccta
ccaaatgttaatactatcatcattgaaaaaagtgagcgttttgggatggcggatttacac
cagcttagaggtagggttggtagaggtaatagacaaggatattgttattttttggtagaa
gataaagaaaatttaagcgaatcggctttaaaaagattggtctctttggagagcaattct
tttcttggggcgggttcattgctggcgtatcacgaccttgagataaggggtggggggaat
ttgttagggcttgaccaaagtgggcatatagagcaaattggctatagtctctatcttaga
atgcttgaagatgagcttaatgcactgagtaaaaatgaaagtgtgagtgaagataagctt
gatttaaaacttagtattaatgcctttttaaatcctgaattaatcaacgaagacagccta
agacttgagctttaccgtcgccttagtaaatgtgaggatagtgccaagctttatgagata
gaggctgagatagaggatagatttggtaagcttgatgtttatacgaagcagtttttagca
ctcattcgtattaaaattttagcgactgggaaatttaaggcaattagtaattatttgcaa
aacatacaatttaccaaattaaacgatgaaaaagaagtgattaaagctaaaagcaaagat
gaggatgatattttagaagccattttggtgcatttaagaaagatgtcggcttaa
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