Capra hircus (goat): 102176910
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Entry
102176910 CDS
T02910
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
chx
Capra hircus (goat)
Pathway
chx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102176910 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chx03041
]
102176910 (DHX38)
Enzymes [BR:
chx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102176910 (DHX38)
Spliceosome [BR:
chx03041
]
Complex C
Other components
Step II factors
102176910 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
T2SSE
nSTAND3
PhoH
AAA_30
Microtub_bd
Flavi_DEAD
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
102176910
NCBI-ProteinID:
XP_017917710
EnsemblRapid:
ENSCHIG00000027105
UniProt:
A0A452GAF8
LinkDB
All DBs
Position
18:complement(40217224..40234787)
Genome browser
AA seq
1227 aa
AA seq
DB search
MEDSSEDASLHRLEGTDVDSQVGGLIFKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRK
EREEKDDGEDKKKSRISSYKDWEESKDDQRDAEAEDSDQAGRSGRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKDEKDRKKERSRDRDCDRKRDRDERDRSRHSS
RSERDGGSDRSSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYR
DSERSHRPSSRDRDRSVRSRYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDG
EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG
VKKEEEPDKSLTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLSYLNVYLQWKN
NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR
STKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggaggacagcagcgaggatgcctcgctccatcggttggaaggcactgacgtggactct
caggttggcggccttatttttaagaccaaaagtgcagctagtgagcagcatgtcttcaag
gcccctgcaccccgcccttcattgctgggactagacttgttggcttccctgaagaggaag
gagagagaggagaaggatgatggcgaggacaagaagaagtccagaatctcttcgtacaag
gactgggaagagagcaaggatgaccagagggatgctgaggcagaagacagtgaccaggct
ggccgaagtggccgaaaagacaggcattatcgatcagcccgggtggagactccatcccat
cctggtggtgtgagcgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg
gagcatggcgtctatgcctcgtccaaagacgaaaaggatcggaagaaggagaggtcgcgg
gatcgagactgtgaccgcaagagagacagagatgagcgggacagaagcaggcacagcagc
agatcggagcgagatggagggtcagatcgcagcagcagaagaaacgaacccgagagcccc
cgacaccggcctaaagatgctgccaccccttcacggtctacctgggaggaagaggacagt
ggctacggctcctcgaggcgctcacagtgggaatcgccctccccaacgccttcctatcgg
gattctgagcggagtcatcggccgtctagtcgagacagggacaggtctgtgaggagcagg
tactcagatgacacccctctgccaaccccatcctacaaatacaacgagtgggctgatgac
agaagacacctggggtccaccccacgtctgtccaggggccgagggagacgtgaggatggc
gaagaaggaatttcatttgacacagaagaggaacggcagcaatgggaggatgaccagagg
caagccgaccgggattggtacatgatggacgaggggtatgatgagtttcacaaccccctg
gcctactcctctgaggactatgtgaggaggcgggagcagcacctgcacaaacagaagcag
aagcgcatttcggctcagcggagacagatcaatgaggacaacgagcgctgggagaccaac
cgcatgctcaccagcggggtggtgcaccggctggaggtggacgaggacttcgaggaggac
agcgcggccaaggtgcacctcatggtgcacaacctggtgcctccctttctagacgggcgc
atcgtcttcaccaagcagccggagcctgtgattccagtcaaggacgccacttcagactta
gccattattgctcggaaaggcagtcaaacagtgcggaaacacagggagcagaaggaacgc
aaaaaggctcaacacaaacactgggaattggctggaaccaaactgggagatataatgggc
gtcaaaaaagaagaagagccggataaatctctgaccgaggatgggaaagtggactacagg
acagagcagaagtttgccgaccacatgaaaaagaagagcgaggccagcagcgagtttgcc
aagaagaagtcgattctggagcagaggcagtacctgcccatctttgccgtgcagcaggaa
ctcctcacgatcatcagagacaacagcatcgtgatcgtggtcggggagacagggagtgga
aagaccacgcagctgacccagtacttgcatgaagacggctacacggactatgggatgatc
ggatgcacccagccccgccgtgtggccgccatgtcggtggccaagagagtcagtgaagag
atggggggaaacctcggtgaggaggtgggttatgccatccgcttcgaagactgcacttca
gaaagcaccttgatcaagtacatgactgatggcatcctgctgagagagtccctgcgggaa
gcggacctggatcactacagcgccatcatcatggacgaggcccacgagcgctccctcaac
actgacgtgctcttcgggctgctccgggaggtggtggctcggcgctcagacctgaagctc
attgtcacatcagccaccatggacgcagagaaatttgcctccttttttgggaacgtcccc
atcttccacatccctggacgtaccttccctgtggacattctcttcagcaagaccccgcag
gaagactatgtggaggccgcggtgaagcagtccctccaggtacatctgtcgggggccccc
ggggacatcctcatcttcatgcctggccaagaggacattgaggtgacctcagatcagatc
gtggagcatctggaggaactggagaatgcgcccgccttggccgtgctgcccatctactcc
cagctgccctctgacctccaggccaagatattccagaaggctccggatggcgtccggaag
tgtattgtcgccactaacattgctgagacctccctgaccgtcgatggcatcatgtttgtt
atcgattccggttattgtaagttaaaggtcttcaacccccggattggcatggatgctctg
cagatctaccccatcagccaggccaatgccaaccagcggtcgggacgagctggcaggacg
ggcccaggtcagtgtttcagactctacacccagagtgcctacaagaacgagctcctgacc
accacggtgcccgagatccagcggaccaacctggccaacgtggtgctgctgctcaagtcc
ctgggggtgcaggacctgctgcagttccacttcatggacccacccccggaggacaacatg
ctcaactccatgtaccagctctggatccttggggccctggacaacacaggtggtctgacc
tcgacggggcggctgatggtggagttcccgctggacccagccctgtccaagatgctcatc
gtgtcctgtgacatgggctgcagctccgagatcctgctcatcgtctccatgctctcggtc
ccagccatcttctacaggcccaagggccgagaggaggagagcgatcaaatccgggaaaag
tttgcagtccctgagagtgaccacctgagctacctgaacgtctacctgcagtggaagaac
aacaattactccaccatctggtgtaacgatcatttcatccacgccaaggccatgcggaag
gtccgggaagtgcgggctcagctcaaggacatcatggtgcagcagcggatgagcctggcc
tcttgtggcactgactgggacatcgtcaggaagtgcatctgtgctgcctatttccaccag
gcagccaagctcaagggaatcggggagtatgtgaacatccggacaggcatgccctgccac
ctgcaccctaccagctccctcttcggaatgggctacaccccagactacattgtgtatcat
gagttggtcatgaccaccaaggagtacatgcagtgtgtgactgccgtggacggagagtgg
ctggcagagctgggccccatgttctacagcgtgaaacaggctgggaagtctcggcaggag
aaccgccgacgggccaaagaggaagcgtccgccatggaggaggagatggcactggctgag
gagcagctgcgggcccggcggcaggagcaggaaaagcgcagcccattgggcagcgtcagg
tctacgaagatctacactcctggtcggaaggagcagggggaacccatgaccccccgccgc
acaccagcccgctttgggctctga
DBGET
integrated database retrieval system
