Capra hircus (goat): 102189849
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Entry
102189849 CDS
T02910
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
chx
Capra hircus (goat)
Pathway
chx03013
Nucleocytoplasmic transport
chx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102189849 (UPF1)
03015 mRNA surveillance pathway
102189849 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chx03019
]
102189849 (UPF1)
Enzymes [BR:
chx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102189849 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102189849 (UPF1)
Messenger RNA biogenesis [BR:
chx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102189849 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102189849 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102189849
NCBI-ProteinID:
XP_017906947
EnsemblRapid:
ENSCHIG00000011018
LinkDB
All DBs
Position
7:104385464..104418788
Genome browser
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgcgggggccccggtc
ggagccggcccgggcgcggcggccggacagctcgacgcgcaggttggtggccctgagggc
atcctgcagaacggggccgtggacgacagcgtggccaagaccagccagttgttggccgag
ttgaactttgaagaagatgaagaagatacctattacacaaaggatctccctgtacacgcc
tgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaacaccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaaatgcaaagaggtgaccctgcacaaggatgggcccctaggggagacggttctggag
tgttacaactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggctgac
tcggttgtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcccagtggcagcccctgatccaggaccggtgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcactgcccagcagatc
aacaagctggaggagctctggaaggagaacccttctgccaccttggaggacctggagaag
cccggagtggatgaggagccgcagcacgtcctcttgcgctacgaggacgcctaccagtac
cagaacatattcgggcctctggtcaagctggaggctgactacgacaagaagctgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctctggaaagggatcggccacgtcatcaaggtccctgataattatggtgatgagatt
gccattgagcttcggagcagtgtgggtgcccctgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcatttgacagaatgcagagcgcactgaaaacctttgcc
gtggacgagacctccgtgtcgggctacatctaccataaactgcttggccacgaggtggag
gatgtgatcatcaagtgccagctgcccaagcgcttcacggcacaggggctccctgacctc
aaccactctcaggtttacgccgtgaagactgtgctgcagagaccgctgagtctgatccag
ggcccaccgggcacaggaaagaccgtgacctcagccaccatcgtctaccacctggctcgg
caaggcaacgggcccgtgctggtctgtgctccaagcaacatagccgtggatcagctgact
gagaagatccaccagaccgggctgaaagtcgtgcggctctgcgccaagagccgcgaggcc
atagactccccggtgtccttcttggccctgcacaaccagatcaggaacatggacagcatg
ccagagctccagaagctgcagcagctgaaggatgagaccggggagctgtcatcggcggac
gagaagcgttacagagccctgaagcgcactgccgagagggagctgctcatgaacgcagat
gtcatctgctgcacgtgtgtgggcgcaggagacccgaggctcgccaagatgcagttccgc
tccattttgatcgacgaaagcacgcaggccaccgagccagagtgcatggtgcctgtggtc
cttggagccaagcagctgatcctcgtgggtgaccactgccagctgggccctgtggtgatg
tgcaagaaggccgccaaggccgggctgtcgcagtcgctctttgagcgcctggtggtgctg
ggcatccgccccatccgcctccaggtccagtaccggatgcaccccgcgctcagcgccttc
ccatccaacatcttctacgagggctctctccagaacggcgttaccgcagcggatcgtgta
aagaaggggtttgactttcagtggccccaaccggataaaccaatgttcttctatgtgacc
cagggccaagaggagattgccagctcgggcacctcctacctgaacaggacggaggctgca
aacgtggagaagatcaccacgaagctgctgaaggcaggcgccaagccggaccagatcggc
atcatcaccccctacgagggccagcgctcctacctggtgcagtacatgcagttcagcggc
tccctgcacaccaagctctaccaggaggtggagattgccagtgtggacgcgttccagggc
cgcgagaaggacttcatcatcctctcctgtgtgcgggccaatgagcaccaaggcattgga
tttttgaatgaccccaggcgcctcaacgtggccttgaccagagcacgatatggggtcatt
atcgtgggtaacccgaaggccctgtccaagcagccgttgtggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggagggacccctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgacg
acagccatgtatgatgcccgggaggccatcatcccagggtcggtctacgaccggagcagc
cagggccggccctcgaacatgtacttccagacccacgaccagatcggcatgatcagtgcc
ggccccagccacgtggctgccatgaacatccccattcccttcaacctggtcatgccgccc
atgccaccaccggggtattttggacaagctaacgggccagccgcaggccgcggcacccca
aaaggcaagactggtcgtggggggcgccagaagaaccgctttgggcttcctgggcccagt
cagacgaacctccccaacagccaggccagccaggatgtggcgtcccagcccttctcccag
ggcgccctgacccaaggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggggatgagtttaagtcacagatc
gacgtggcgctgtcgcaagactccacataccagggcgagcgggcgtaccagcacggtgga
gtgacggggctgtcccagtactag
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