Calycomorphotria hydatis: V22_38370
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Entry
V22_38370 CDS
T09810
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
chya
Calycomorphotria hydatis
Pathway
chya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V22_38370 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chya03019
]
V22_38370 (rnr)
03016 Transfer RNA biogenesis [BR:
chya03016
]
V22_38370 (rnr)
Enzymes [BR:
chya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V22_38370 (rnr)
Messenger RNA biogenesis [BR:
chya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V22_38370 (rnr)
Transfer RNA biogenesis [BR:
chya03016
]
Prokaryotic type
tRNA degradation factors
V22_38370 (rnr)
BRITE hierarchy
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
CinA_KH
Motif
Other DBs
NCBI-ProteinID:
QDT66567
UniProt:
A0A517TDW7
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All DBs
Position
4543191..4545461
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AA seq
756 aa
AA seq
DB search
MSPKKRPHPSHLEHRIVELLNVPGYKPVKPTVIARRLSLTKKNAGEFRTALSNLLHAGTV
VEDRSGKLRKRSAPGVIVGRFKKTRKGGSVLELDEDGNIATNAREVLLRPEDCFDAASGD
EVAVQLSNRRGPRGKRFGQIKEVISRARHNFVGTYHDRDGKGYVRVDGDVFESSIVVGDP
GAKGAAEGDKVVIEMLQFPRFNRRGEAVLIKVLGAAGEPGVDTQSIIHEFDLPTEFSAEA
LEEAADQADRFNPEDLSGREDFTKETIVTIDPVDARDFDDAISLNRTKDGHWHLGVHIAD
VSHFVEEKSPLDDDAKERATSVYLPGTVIPMLPEVISNGLASLQQGNVRFTKSAMIEFNA
DGIPVNTEFCNSAINVTRRFAYEEVMPILNEPDKFKATVPAKIRKLLADMHELAMMLRHR
RLNNGAIELQLPEVKLQLDREGKVSGANIVEHDESHQIIEEFMLAANQAVATELHMRGVP
FIRRVHPEPNEEKLRDFAEFSGLMGYRLKLYQSRSHLQQILTDVKGEPEEIALNYALLRS
MKQAAYSIEEDGHYALAFEHYCHFTSPIRRYADLVIHRTIAHELFEGEGESRGAAPAELA
KIAAHCSDMSRRAEKAERELIKLKLLQHMATKVGEQFETIVTGVERFGLFCRGVELPFEG
LAPKWQIEEALDDLLDYDAGSMALIARRSGLTLRLGAPVKVEITKVDIEARQLDLCPIFE
DGAKGQRRRGEKKREDKPQKKTARNLNPRRQRRGRR
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
ttgtctcctaaaaaacgtcctcatccatcccacctcgaacatcgcattgtcgaactgctc
aatgtacccggctacaagccggtgaagccgacggtaatcgcccggcgattgtcgctcacc
aagaaaaacgcgggcgagtttcgcacggctctcagcaatttgctgcatgcgggtaccgtc
gtcgaagatcgtagcggcaaactgcggaagcggtccgcacccggcgtgattgtcgggcgg
ttcaagaaaacccgcaaaggcggcagtgttcttgaactcgatgaagacggcaacattgcg
accaatgcccgtgaagtgctattgcgcccggaagattgtttcgacgccgcgtcaggtgat
gaagtggcggtccaactgagcaatcgacgcgggccacgcggcaagcggttcgggcagatc
aaggaagtcatcagccgggcgcgtcataacttcgtcggcacctatcacgaccgggatggc
aaaggctatgtgcgggtcgatggtgatgtgttcgagtcctcaatcgttgtcggcgatccg
ggagccaagggagctgccgaaggcgacaaggttgtcattgagatgctgcagtttccccgc
ttcaacagacgcggggaagcagtgctgattaaggtgctcggtgctgcgggagaaccggga
gttgatacgcagtcgatcattcacgaattcgacctgccgaccgagttttccgctgaagcc
ctcgaagaagcggctgatcaagccgatcgattcaatcccgaagatctctcaggccgggaa
gacttcacgaaagagacgattgtcacgatcgatcccgtcgatgcccgtgactttgatgat
gccatttcgttaaaccgcacgaaagacggccattggcatctgggcgtgcatatcgccgat
gtctcgcactttgtggaagagaagtcgccgcttgatgatgacgcgaaggaacgcgcgacg
agcgtttacctaccggggaccgtgatcccgatgttgccggaagtgatctcgaacggactc
gcgagtttgcagcagggaaatgtgcgtttcacaaagtcggccatgattgaattcaacgcc
gatggcattccggtaaacactgaattttgtaactcggcgattaatgttacccgccggttc
gcttacgaagaggtgatgccgattctgaatgagccggacaagttcaaagcgaccgtgccc
gccaagatacggaagctgctcgccgacatgcacgaactcgcgatgatgttaaggcatcgc
cgcttaaacaacggcgcaatcgaactgcagttgccggaggtgaaactgcagcttgaccgc
gaaggcaaagtctctggagcaaatattgttgaacatgatgaaagccatcagatcatcgaa
gaatttatgctggcggcgaaccaggcggtggccaccgagctgcacatgcgcggcgtgccg
ttcattcgacgggtacaccccgaaccgaatgaagaaaagctgcgcgacttcgccgagttt
tccggactgatgggctatcgcctgaagttgtatcaaagccgctcgcatctgcagcagata
ttgaccgacgtgaagggtgagccggaagaaatcgccttaaactacgccttgttaagaagc
atgaagcaggcggcctattcgattgaagaggacgggcattacgcactcgcgttcgaacat
tattgtcacttcacaagtccgatccggcgatacgctgatttggtcattcatcgcacgatt
gctcacgaattattcgaaggagagggagagtcacgcggagcggcaccggcggagctggcg
aagattgcggcccattgttcggacatgtcccgcagggcggagaaagcggagcgggaactc
atcaaattaaaactcctgcaacacatggcgacgaaagtgggcgaacagtttgaaacgatc
gtcacaggcgtcgaacggttcggcctcttctgccgcggcgttgaattaccgttcgaagga
ctcgcgccgaaatggcaaattgaagaagcccttgatgatcttctcgactacgacgccggc
tctatggccctcatcgcccgccgcagcggactgaccttaagactcggtgccccggtcaaa
gtcgaaatcaccaaagtcgacatcgaagccagacaactcgacctgtgccccatcttcgaa
gacggcgccaaaggccaacgccgccgcggcgagaagaagcgggaagataaaccacaaaag
aaaaccgcaagaaatttgaacccgagacggcaacggcgggggcggaggtga
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