Campylobacter hyointestinalis: CHH_1060
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Entry
CHH_1060 CDS
T04651
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chyo
Campylobacter hyointestinalis
Pathway
chyo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHH_1060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chyo03400
]
CHH_1060 (mfd)
Enzymes [BR:
chyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHH_1060 (mfd)
DNA repair and recombination proteins [BR:
chyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHH_1060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ATPase_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
ANE32707
LinkDB
All DBs
Position
complement(1002535..1005489)
Genome browser
AA seq
984 aa
AA seq
DB search
MQARIYEFFKEIKNDYEILVVNDDKEALKASNAASFAGKKCYVLPDFRAVKGDDLRAFNS
ELLEISKTLSEFYKDESGGALMISPIRTLLNKLPAKTHLKTKKLSFADKINLNELKDELL
GFGYNFVDIVQSKGEVRVSGDIIDIFSVDANQPFRILLDIDTIESIRTFDLSTQKSDKNE
LESIEITPFLASLSKDEFDEVSQKTATFQSNALINDINSFGFWVIDGFIDYFENFKCILA
GNLDINDIFDKDLSFLNSVAKLPEPKHFKDLEVSVNSDLIQFHSDKKITILSKNESSFNA
LNLTHFSNVSLKISPLVLNVISSNELIISLNSYEKRQRVKKASLVIDELKKDDFVVHSEY
GIGKFLGLELITVLGSKKEFVVIAYQNDDRLLLPVEHLNMIDRYIAGSGSVVAIDRLGKA
SFAKIKEKVREKLFIIASKIISLAAKRELIEAVKFNPSKGYYDFKLSAGFTYTSDQEKAI
NDIENDLKSGRVMDRLLSGDVGFGKTEVAMNAIYLCVKSGYQALFFVPTTLLSSQHFKSL
KERLSKFDIDVRRLDRFTNPKEKSLIIKDLEGSKPMVVIGTHALLSLKAKNLGLIIIDEE
HKFGVKQKEKLKEVSEHSHILSMSATPIPRSLNMALSSVKSYSTLLTPPLDRQDVRTFVK
QWDEKLIKEIILREIRRGGQVFYVHNLIKDMSGVEAELKALMPNLKILTLHSKIDAKTTE
DEMIKFADKKYDVLLCTSIVESGIHLPNANTIIIDDANKFGMADLHQLRGRVGRSSVQGY
CYFLVQDKASLSSDAIKRLVALESNSFLGSGSLLAYHDLEIRGGGNLVGEAQSGHIEAIG
YSLYLKMLEDEINSLLNKKTFELKDIDLKLSVNAFLNSDLISEDRLRLELYRRLSKCEEI
NEVYEIGAEIEDRFGKLDIYTKQFLDIIIIKILASKQGFKAISNYEQNIALTKSDDTKVI
LKSRSKDDDDLLAEILAYLRKNKT
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaaggatttatgagtttttcaaagagataaaaaacgactatgaaattttagta
gtaaatgatgataaagaagcactaaaagctagcaacgctgcaagttttgcaggtaaaaaa
tgctacgttcttcctgattttagagctgtcaaaggagatgatctaagagcttttaatagc
gaacttttagagatcagtaagactttaagcgaattttataaagacgagagcggtggcgct
cttatgatctctcctataagaactcttttaaacaaacttccggcaaaaactcaccttaaa
actaaaaaacttagtttcgctgataagataaatttaaacgaactaaaagatgagttgcta
ggctttggatataattttgtagatatcgttcaaagcaaaggcgaagttagagtcagtggc
gatatcatcgatatatttagtgtagatgcaaatcagccttttaggatattgctcgatatt
gatactatagaaagcataaggacttttgatctaagcacacaaaaatcagataaaaacgag
cttgaaagtatagagataactccgtttttagcaagtcttagcaaagatgaatttgatgaa
gtgagtcaaaaaacagcgacatttcagtcaaatgctttgataaatgatatcaactcattt
ggtttttgggttatagatggatttattgattattttgaaaatttcaaatgtattttagca
ggaaatttagatatcaatgatatttttgataaagatttaagttttttaaattcagttgcg
aaattgccagaaccaaagcattttaaagatttagaagtaagcgtaaatagcgatttaatc
cagtttcatagcgacaaaaaaataaccatacttagcaaaaacgagagtagtttcaatgct
ctaaatttgacccactttagtaatgtttctcttaagataagccctttagtattaaatgta
ataagtagcaatgagcttataatttcgctaaattcatatgaaaaaaggcagcgcgtaaaa
aaagctagtttagtaatagatgagctaaaaaaagatgattttgtcgtgcatagtgagtat
ggtataggcaagtttttagggcttgagctcatcaccgttttaggtagcaaaaaagagttt
gtggttatcgcttatcaaaatgatgataggcttcttttaccagttgaacatctaaatatg
atagatcgttacattgcaggaagcggttcggtcgttgctattgatagactaggaaaagct
agttttgctaagatcaaagaaaaagtcagggaaaaactatttatcatagctagtaagatc
atatctttagcagcaaaaagagagctcatagaggcggttaaatttaatcctagcaaagga
tattacgattttaagctaagtgctggatttacttatactagtgatcaagaaaaagccata
aatgatatagaaaatgatttaaaaagtggtcgtgttatggataggcttcttagtggagat
gtcggttttggtaagactgaagtcgcgatgaatgctatttatctatgtgtaaaaagtggt
tatcaagctctatttttcgtgcctactacactgcttagttctcagcatttcaaaagctta
aaagagcgtttaagtaaatttgatatagatgttagaaggcttgatcgttttactaatcca
aaggaaaaatcgcttattataaaagatttagagggttcaaaaccgatggtggttatcgga
actcacgctttattatctttaaaagctaaaaatttggggcttatcatcatagatgaggag
cataaatttggcgttaaacaaaaagaaaagttaaaagaagtcagcgagcattctcatata
ctttctatgtcagcaactccgatcccaagaagtttaaatatggctttgagctcagtcaaa
agctactctacgcttttgactccgccacttgataggcaagatgttagaacatttgtaaaa
cagtgggacgaaaaactcataaaagagataatcctaagagagatcagacgtggtggacaa
gttttttatgtgcataatttgataaaagatatgagtggcgtagaagcagagctaaaagct
ttgatgccaaatttaaagattttgacgcttcatagtaaaatagatgcaaaaaccacagaa
gacgagatgataaaattcgctgataaaaagtatgatgttttgctttgtacgagcatagtt
gagagtgggatacatcttccaaatgcaaatactatcatcatcgacgatgcaaataaattt
ggtatggcagaccttcatcaactaagaggaagagtcggtagaagcagtgttcaaggatat
tgttatttcttagtgcaagacaaagctagtcttagtagcgatgctataaaaagactagtg
gcgcttgagagtaattcgtttttaggatctggttcattgctagcttatcatgatttagag
atcagaggcggtggaaatttagtaggagaagctcaaagtgggcacatagaagctataggt
tattctctgtatttaaaaatgcttgaagatgagataaactcgcttttaaataaaaaaaca
tttgagctcaaagatatagatctaaaacttagcgtaaatgcgtttttaaacagtgatctt
ataagcgaagacagactaaggctagagctttatagacgtcttagtaaatgcgaagagata
aatgaagtctatgagataggcgctgagatagaagatagatttggtaaattagatatatat
acaaagcagtttttagatataattattataaaaattttggcaagcaagcaaggttttaag
gctataagcaattatgaacaaaatattgctcttacaaaaagtgatgatactaaagtgatt
ttaaaatcacgcagtaaggatgacgatgatttgctagctgaaattttagcttatctaagg
aaaaataaaacgtga
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