Citrobacter sp. TSA-1: HF677_008125
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Entry
HF677_008125 CDS
T09275
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
cib
Citrobacter sp. TSA-1
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_008125
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
HF677_008125
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
UPF0547
AAA_16
zf-tcix
AAA_22
SLFN-g3_helicase
zf-ribbon_3
DZR
Motif
Other DBs
NCBI-ProteinID:
QKE19640
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Position
complement(1713258..1715018)
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AA seq
586 aa
AA seq
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MIFTLRPYQKEAVDATLNHFRHHRTPAVIVLPTGAGKSLVIAELARVARGRVLILAHVKE
LVAQNHGKYRALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH
RIGDDDESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYHFHYHGMVRGDEKALFRD
CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSETDLNQELKKQQRITPH
IISQIVEFAQTRKGVMIFAATVEHAKEILGLLPADDAALITGDTPGAERDVLIEEFKAQR
FRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP
HDLYAPEVGAPKGKSDNVPVQVFCPTCGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG
HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMV
LQNGQDEKGEWLKITYYDEDGADVSERFRLHTPAQRTAFEQLFIRPHTRTPGIPLRWITA
ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRYRRAHELRG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgatttttactcttcgcccgtaccaaaaagaagccgtggatgccacgctcaaccatttc
cgccaccatcgcacgccagcggttatcgtcctgccaaccggtgcgggaaaaagcctggtg
attgctgaactggcccgcgtggcgcgtggtcgcgtgctgatactggcgcacgttaaagaa
ctggtcgcgcaaaaccatggcaaatatcgcgcgttggggctggaagccgatatttttgcc
gcaggactgaagcgtaaagagagccacgggaaagtggtatttggcagcgtacagtcggtg
gcgcgtaatcttgacgcctttcagggagaattctcgctgcttatcgtcgatgaatgtcac
cgtattggtgatgacgacgagagtcaatatcagcaaatcctcactcacctgaccaaagta
aatccccacttacgcctgctcgggcttactgccactccttttcgtttgggcaaaggctgg
atttatcactttcattatcacggtatggtgcgcggcgatgaaaaagcgctgtttcgtgac
tgcatttatgaattaccgttgcgttacatgattaaacacggctacctgacgccgccagaa
cgcctcgacatgccggtagtgcagtatgacttcagccgcctgcaggcgcagagtaacggc
ctgtttagcgaaacggatctgaatcaggaactgaaaaagcagcagcgaataacgccgcat
atcatcagccagattgtcgagtttgcccagacgcgcaaaggggtgatgattttcgccgcc
acagtggagcacgccaaagaaattctgggcctgctgcctgctgacgatgccgcgctaatc
accggagacacgcctggtgcagagcgtgatgtgctgattgaagagttcaaagcccagcgc
tttcgctatctggtgaatgtgtcggtcctgaccactggcttcgatgccccgcacgtcgac
cttatcgccattctgcgcccgacggagtcagttagcctttaccaacaaattgtcggtcgc
ggcctgcgcctggcaccgggtaaaaccgactgtctgatcctcgattatgccggtaacccg
cacgatctttacgcgccggaagtgggggcgccgaaagggaaaagcgataacgttccggtg
caggtgttctgtcccacctgcgggtttgcaaacaccttctggggcaaaacaacggcagac
ggcacgctgattgaacactttggccgccgctgtcaggggtggtttgaagatgatgacggc
catcgcgaacagtgcgattttcgttttcgttttaaaaactgcccacaatgcaacgcggaa
aatgatatcgccgcccgccgttgtcgggagtgcgacacggtgctggttgatccagatgac
atgctgaaagccgcgctcaggctcaaagatgcgctggtcctgcgctgtagcggcatggtg
ttacaaaacggccaggatgaaaaaggcgaatggctaaaaatcacctattacgatgaagat
ggtgccgacgttagcgaacgctttcgcctgcatactcccgcgcaacgtacggctttcgag
caactgtttattcgcccgcacacccgaacgcccggcattcccttacgctggataaccgcc
gccgatatcctcgcccagcaggcgctgttacgtcatcctgatttcgtggtggcgcgtatg
aaaggtcagtactggcaggtccgtgaaaaggtcttcgattatgaaggacgctatcgtcgg
gcacatgaattacgcggttaa
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