Citrus x clementina (clementine): CICLE_v10004206mg
Help
Entry
CICLE_v10004206mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10004206mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cic03041
]
CICLE_v10004206mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CICLE_v10004206mg
Spliceosome [BR:
cic03041
]
Complex A
U2 snRNP components
U2 related factors
CICLE_v10004206mg
Complex B
CICLE_v10004206mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
18033156
NCBI-ProteinID:
XP_006422279
UniProt:
V4U8B7
LinkDB
All DBs
Position
Unknown
AA seq
1110 aa
AA seq
DB search
MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRE
KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE
RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE
KLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANV
EEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPA
LQIGAAEDEDIDPLDAFMNSMVLPEVEKLQNTVEPSFTDGNNVESKKMDRKGDRRSNGEQ
PKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKI
DYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETI
RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV
GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI
DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQV
EILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVH
SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE
LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD
DLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDS
DDEDEGIRKAGGDISQQDALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLG
LSIPGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDF
PQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRA
KAELKRVLEDFTNQALSLPGGAQPGRYSVV
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atggcacattcccatcgtgaccgtgatagggaaaaagagaaggagaaacacagggagaag
agtaggcgctctgagagagagcagagcactgattctgatgaggataagcatgataaggag
aaggagaaggataagcatagagacagagacaggaggagagatagagatagggatagggag
aaggagagagaggagaagagggaaagggcaagagaaaaagaaagagagagggagaagagg
gatcgtgaacgtgaagatagagagcgggagagagagagagaacgggaaaggagggaacgg
gacagagagagggagaagagggagcgtgagagagatagagacaaggaaaaagatagggaa
aggaaatcaagggatagggagaaacgccgcaaagttgaaagtgatgatagtgatgaagac
aaggaccgtgatcgaaagcgtcgtaggagacatgatgatgatcataaggagagagttcgc
gaacggagtcttagccggtcaaacaggcatagggatgaaaatgacgagagcccaagggaa
aaactggttgaggatgattctgacaagaaagagaagaaaacccgagaagaagaactagag
gatgaacagcggaagctggatgaggaaatggaaaagaggagaaggagagttcaggagtgg
caagagttgaaaaggaagaaggaggaatccgagagagaaaatcgtggagatgcaaatgtt
gaggagcccaaggctgggaggaactggacccttgatcgagaagattctgatgatgaagaa
gtaccccaaacaggaaaatctgagacagatatggatgcagatgaagagcccaagccttct
gaaaaccaagttggagatgcaatgttggtagactctgacggtggttcagctgctcctgct
ttgcaaattggggctgctgaggatgaggatattgatccacttgatgctttcatgaactct
atggtgttacctgaagttgagaagctacaaaataccgtggaaccttcgttcaccgatggt
aataatgtggagtcaaagaagatggatcgtaagggtgataggaggagtaatggtgaacag
ccaaagaaaagttccaataagtcacttgggagaataattcctggcgaagattctgattca
gattatggggacctggagaatgatgagaagcctctagaagatgaagacgatgatgaattc
atgaagagggtgaaaaagacaaaagccgagaaattatccattgttgaccactcaaagatt
gattatcagcctttcaggaagaacttttatattgaagtaaaggagatagcaagaatgact
cctgaagaggtctctgcatataggaaacaactggagttgaagatacatggaaaggatgtg
cccaaaccaattaaaacctggcatcaaactggtcttacaagcaaaattatggagacaata
aggaagcttaactatgaaaagcccatgcctatccaagcgcaggcgttaccagttattatg
agtggtcgagactgcatcggcgttgcaaaaactggctcagggaaaacccttgcatttgtg
ctgccaatgttgaggcatatcaaggaccaaccgcctgtagcagctggggatgggccagtt
gggctgataatggcaccaactagggagcttgttcagcagatccacagtgatatcaggaag
tttgcaaaggtaatgggtgtcagatgtgtgcctgtctatggtggttctggtgttgcccaa
caaatcagtgaattaaaacgtgggactgaaattgttgtttgtactccaggtcgaatgatt
gatatactttgcacaagtggagggaaaattacaaatttgagaagagtaacctatttggtc
atggatgaagcagatcgaatgtttgacatgggctttgaacctcagatcactcgaattgtt
caaaatattaggccagatcgccaaactgtcctcttttctgctacttttcctcgtcaggtt
gaaattttggcccgtaaggtgttgaacaaacctgtcgagatacaggttggtgggagaagt
gtcgtaaacaaagatataactcagttggttgaggtgaggccagaaagtgacaggttcttg
agacttttggaacttctaggtgaatggtacgagaaggggaaaattttgatatttgtccac
agtcaggaaaaatgtgatgctttgttcagggatttgcttaagcatggttatccttgcctt
tcgcttcatggggcgaaggatcagactgatcgtgagtcaaccatttctgatttcaagagc
aatgtctgcaatttgttgattgctactagtgttgcagctaggggtttagatgtaaaggag
cttgaactagtaatcaactttgatgcaccaaaccactatgaagattatgttcatcgcgtt
ggtaggactggaagagctggtcgaaaaggctgtgccattacatttatctctgaggaggat
gcaaaatattctccagatcttgtaaaggcattggaactatctgagcaagttgttcctgat
gacctgaaagctcttgctgatagtttcatggctaaagtgaatcaggggcttgagcaagcc
catggaactggttatggtggaagtggttttaaatttaatgaagaggaagatgagaagagg
aaagcagcgaagaaagctcaggcaaaagaatatggctttgaggaagacaagtcagattct
gatgatgaagatgaaggaatcaggaaggcaggtggtgacatctcacagcaagatgccctt
gctaagatctcagctattgctgctgcctccaaggcgtcagcttcaatgccaactcctatt
tctgccgctcaactgcttccaaatgctggactacctatttctctgcctggtgtacttggc
ctatcaattcctggagcagcaccaactgtctctgcaaccgggctgcctgtggtaccaaat
gatggggcagctcgggcggcagcattagcagctgccattaacttgcagcataatctggca
aagattcaagctgatgcaatgcccgaacattatgaagcagaattggagattaatgatttt
ccacagaatgctcgatggaaggttacgcacaaggaaactttgggtccaatttcagaatgg
actggagctgctattaccacaaggggtcaatatttcccacctagccggatcgctggccca
ggagagcgcaagctttacttgttcattgagggccctactgaacagtccgtcaagagagct
aaagctgagttaaaacgtgttttggaagacttcacaaatcaggcactatcacttcctggt
ggagctcaaccgggcagatactcggttgtataa
DBGET
integrated database retrieval system
