Citrus x clementina (clementine): CICLE_v10007283mg
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Entry
CICLE_v10007283mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CICLE_v10007283mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cic03400
]
CICLE_v10007283mg
Enzymes [BR:
cic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CICLE_v10007283mg
DNA repair and recombination proteins [BR:
cic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CICLE_v10007283mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT_2
BRCT
PTCB-BRCT
DNA_ligase_A_C
DNA_ligase_A_M
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
18056109
NCBI-ProteinID:
XP_006453239
UniProt:
V4WIB9
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MVFELFAQLMTLSVLHDKDNACNISTVAMNDGICVCVHVYMLSQLRSQIMAADQTGEPCW
SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVL
IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY
FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRF
PRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNV
SIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSV
THCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEV
DEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTE
PLSPDWEVILGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAR
EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYLELCEEDLDMEEPSST
LETSDKQNVSSFPDGDGKQRGTRGVSPASPKREGKRKRGRPAGGSAKKRKSTVNLARRKR
PHVRNKPSKIYQNESDESNASDETEKKEEINREENHEDREMDDEENLETRQTNVVEDLES
LDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSL
GMKNEKTTNPIPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggtatttgagttgtttgcgcagctgatgactttaagtgtacttcatgataaggacaat
gcatgtaacatatctactgtagccatgaatgatggcatatgtgtgtgtgtgcatgtgtat
atgttatctcagttaagatcccaaattatggctgctgatcaaacaggggaaccttgctgg
tcacttgttgctcataatgtggatgaggttgagaagttcttcaaagaaaccattgagaat
agggatgaaggaattgtattgaaagaccttggttcgaaatgggagccaggtgatcgaagt
ggaaagtggttgaagctgaagcctgagtacatccgtgctggttcagacttggatgtacta
ataattggaggatattatggctccggtcgtcgtggaggggaggttgctcagttcttggtt
gccctggcagagcgtccagctccagatacatatcctagaagatttatctccttttgccga
gtgggtactggtctctctgatgaggaactagatgctgttgtaactaagttgaagccttat
tttaggaaatatgaatatccaaaaagggcacctccaagtttttatcaagttacaaataat
tcaaaggagagacctgatgtttggattgagagccctgagaaatcaataatactttctatt
accagtgatattcgaaccataaggtctgaggttttttctgcaccatacagcctgagattt
ccacgcattgatagagtgagatatgacaagccttggcatgattgccttgacgtgcagtca
tttgtagaacttgtgcattcaagtaatggcaccactcagaaggggaaagaatatggaggc
ttgcaagatgataagccaaaacaattcagatcctccagaaagggagagaaaaagaatgtg
tctattgttccttctcattttcttcagactgatgtttctgacataaagggggaaacctca
atattttcagatatggtgttttattttgttaatgtacctccagcctattcccttgactcc
ttgcacaaaatggttgttgagaatggaggaacattttcaatgaatttgaataactcagtt
acccactgtgttgcagctgataacaaagggcttaaatatgaggcagcaaaacgtcgtgga
gatgttattcattactcttgggtcttggattgttgttcacaaaagaagcttctccaattg
cagccaaagtactaccttcatctatctgactcttcgaagaaaaagctacaagaagaagtt
gatgaattttctgacctgtacttttgggatcttgaccttgcagatatcaaacagctctta
agcaatgttgatagatcagaagaccccaaaactattgattattataagaagaagtactgt
ccacaggacaagtggtcttgctttcatggctgctgcatttacttctaccattcaacagag
cctttgagtcctgattgggaagttatattggggcttgccctgaggagattgaagcttgaa
atttcctttcatggcggtaaagtctgcaacaatcttgcaaatgctacccacgtggtggtc
ttgtcagtactgggatatgatgtgaactttaattctcttacagaaagtttcactgccaga
gagaaacatcttttatggaacaagaagttgcatgttgttagatcccagtggttggaagat
tgcttggcgaaggagcaaaagtcggaagaatacgaatacagcttgaagcccactggcatg
caagagtcgtaccttgaattgtgcgaagaagacctggatatggaagaaccctcatctaca
ttggaaacttcagacaaacagaatgtgtcatctttcccggacggtgatggtaagcagaga
ggaaccagaggtgtttcccctgcctcaccaaagagagaaggcaaaaggaaaagaggaaga
cctgctggtggaagcgcaaagaaaagaaaatcaactgtcaacctagctcggagaaaaagg
ccacatgttagaaataaaccttcaaagatataccaaaatgaatctgatgaaagtaatgct
tctgatgaaacagaaaaaaaggaagagatcaatagggaagagaatcatgaagatcgtgaa
atggatgatgaggaaaatctggaaactcgacagactaatgtagtggaagatttagaatca
ttagaccgaggcaaggcacttcaacaagaggttgtcaaagattttgggaaagaaaaacag
actgttagagctcctgatattgaaatgagagaaaggtatcacagcaaagacagtgagaca
actgataagcagcaagttgatgcagttcaagccatgttactggacatgattccaagcctt
ggaatgaagaatgaaaaaactacaaatccgattccgaaagaagagtcatcatctgcagaa
ccaagtgcagagcctacaaagaaaaagaaagtcagctacaaggatattgccagcaaacta
ctcaaggattggtag
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