Celeribacter indicus: P73_3679
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Entry
P73_3679 CDS
T03575
Name
(GenBank) DNA polymerase LigD polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cid
Celeribacter indicus
Pathway
cid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P73_3679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cid03400
]
P73_3679
Enzymes [BR:
cid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P73_3679
DNA repair and recombination proteins [BR:
cid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P73_3679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJE48394
UniProt:
A0A0B5DZF4
LinkDB
All DBs
Position
3767939..3770377
Genome browser
AA seq
812 aa
AA seq
DB search
MGRLERYLEKRDFAATPEPREAGRASQLGLRYSMQKHEATRTHFDLRLEWDDVLLSWAVT
RGPSLRPADKRLAVRTEDHPLSYLAFEGPIPKGNYGAGTVMLFDIGHWQPLEPVEAALKA
GQIRFRLHGRRLTGGWHLVRMRGGRAGDAGRDNWLLIKDEDEAAGRRDPVARYSRSAITN
RSFREIAAGKAPVPAGPEGPLPRFHKPQLATLVEERPSGDEWWHEVKFDGYRALVALGRG
GPRVFTRNGHDWSDRFAALLPAFDALDCSSALIDGEIVAGAGLEGFSALQKAIKAGGPFR
FYGFDLLRLDGRDLTGAPLEDRRAALETLFAPAPPLGLAELSPVIRGDAAEALATICAAG
GEGIISKRRDLPYRGRRTRSWLKVKCGRRDEFVILGWQKSDSRTRPFASLALGAYRDGAL
TYVGKVGTGFDTETMAELARAMAARACRTPPADVPGPDAAGLRWVRPELVAEVKYAETTA
EGRLRQAVFVGLREDKPAQSVRIGEDRMTQEVQGRVNVAGIGISHPDRVVYPEAGVTKLE
VARYYEAMADRILATAADRPLSLVRLPEGLRGERFFQKHAGRGFPEAVKSVPVTEADGKV
AEYIYVSTAAGLVGAAQMGALEFHIWGARRDDPDRPDRMVFDLDPDEGLGFSEVISAAYD
IRDRLAALDLPSWPLVTGGKGVHVVVPLRRIAAWETVKLYARLFATGLAEAESDRFTATM
SKAKRKGRIFIDWLRNERGATAIAPFSLRARPGATVAVPVSWEELGRLSGADAFGLAAAQ
ERDWSALKVPAAVGLSQGRVAKLEAWLGSGAR
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtggggcggctcgagcgatatctcgagaagcgcgacttcgccgcgacgcccgaaccgcgg
gaggcgggccgggcctcgcagctcgggctgcgctacagcatgcagaaacacgaggcgaca
cgcacccatttcgacctgcggctcgaatgggacgacgtgctgctgagctgggcggtgacg
cgcgggccctcgctccgcccggccgacaagcggcttgcggtgcggacggaggaccacccg
ctgagctacctcgccttcgagggaccgatcccgaagggcaattacggggcgggcacggtc
atgcttttcgacatcgggcattggcagccgctcgagccggtggaggcggcgctgaaggcc
gggcagatcaggttccggctgcacgggcggcggctgaccgggggctggcacctcgtgcgg
atgcggggcgggcgcgcgggcgacgcgggccgggacaactggctgctcatcaaggacgag
gacgaggcggcggggcggcgcgatcccgtggcccgctacagccgcagcgcgatcaccaac
cgcagcttccgcgagatcgccgcgggaaaggcgccggttcccgccgggccggagggtccg
ctgccgcggtttcacaagccgcagctcgcgaccctcgtggaggagcgcccctcgggagac
gaatggtggcacgaggtgaaattcgacgggtatcgcgccctcgtggccctcggccgcggc
gggccgcgcgtctttacccgcaacggccatgactggagcgaccgcttcgccgcgctgctc
ccggccttcgatgcgctcgactgctcctccgcgctgatcgacggggagatcgtcgcgggc
gccgggctcgagggtttctccgccctgcaaaaggcgatcaaggcgggcggtccgttccgc
ttctacggcttcgacctcttgcggctcgacgggcgggatctgaccggcgccccgctcgag
gaccggcgtgcggcgctcgaaacgctgttcgccccggccccgcctctcggccttgccgag
ctgtcgccggtgatccggggcgatgccgccgaggcgctcgcgacgatctgcgcagcgggc
ggcgagggcatcatctccaagcggcgcgacctgccctatcgcggccggcgcacgcggagc
tggctcaaggtcaaatgcggacggcgcgacgagttcgtgatcctcggctggcagaagagc
gacagccgcacgcggcccttcgcctccctcgccctcggcgcctatcgcgacggcgcgctc
acctatgtgggcaaggtcggcaccgggttcgacacggagacgatggcggagcttgcccgc
gccatggcggcgcgcgcgtgccggacgccgcccgccgatgtgcccggccccgatgcggcg
ggcctgcgctgggtcaggccggagctcgtggcggaggtgaaatatgccgagacgacggcg
gagggacggctgcggcaggccgtcttcgtcgggttgcgggaggacaagcccgcgcagagc
gtgaggatcggggaggatcgcatgacacaggaggtccaggggcgcgtgaatgtcgccggg
atcggcatcagccacccggaccgggtcgtctacccggaggccggggtgacgaagctcgag
gtggcgcgatattacgaggcgatggcggatcgcatcctcgccaccgccgccgaccgtccg
ctgtccctcgtgcggctgcccgaggggctgcgcggcgagcggttcttccagaagcacgcg
ggccggggatttcccgaggcggtgaaatccgtgccggtgacggaggcggacggcaaggtg
gcggagtatatctatgtctcgaccgccgcgggtctcgtcggggcggcgcagatgggcgcg
ctcgaattccacatctggggggcgcggcgggacgatcccgaccggccggaccgcatggtc
ttcgacctcgacccggacgaggggctggggttctccgaagtgatctccgccgcatatgac
atccgcgaccggctcgccgcgctcgacctgccctcctggcccctggtcaccggcggcaag
ggcgtccatgtcgtcgtgccgctccgccgcatcgcggcttgggagacggtaaagctctat
gcccggctcttcgccaccgggctggcggaggcggagtccgaccgcttcaccgcgaccatg
tcgaaggcgaagcgcaaggggcgcatcttcatcgactggctgcgcaacgagcgcggcgcc
acggcgatcgcgcccttctcgctgcgcgcgcgtccgggcgcgaccgtggccgtgccggtg
tcgtgggaagagctcgggaggctgtctggcgccgatgccttcggcctcgcggcggcgcag
gagcgcgactggtcggcacttaaggtgcccgccgcggtggggctgtcgcagggccgcgtg
gcgaagctcgaggcctggctgggctccggcgcgaggtga
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