Ctenopharyngodon idella (grass carp): 127494924
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Entry
127494924 CDS
T08802
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127494924
09122 Translation
03013 Nucleocytoplasmic transport
127494924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127494924
03041 Spliceosome [BR:
cide03041
]
127494924
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
127494924
Spliceosome [BR:
cide03041
]
Complex C
Other components
EJC/TREX
127494924
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127494924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
127494924
NCBI-ProteinID:
XP_051717111
LinkDB
All DBs
Position
2:complement(30375697..30395054)
Genome browser
AA seq
655 aa
AA seq
DB search
MSPPSHFDFIEARDKFTAAAKSAVDLRNCKPLTNAFSHLPGNETEKKATLDQALRGVLEE
QIVKKKVNVEDFLSLIYISIDGVTEGICSASTPFLLLGDVLDCLPLDQCDKIFTFVEENV
STWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQDSTLGLQHTEVKEDGMEVEEGEMGDEDAPAPCSIPIDYNLYRKFWT
LQDYFRNPVQCYDKFSWMTFLKYSDETLAVFKSYKLDDMQASKKKLKEMRTAAGDHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQSSWIEDTAKL
VYQLLRETPPDGDKFASMVEHILNTEENWNSWKNEGCPSFVKERPAETKPMRPSRKRQAP
EDFLGKGPDRKILMGNEELTRLWNLNPDNMEACKSDSREFMPSLEEFFEEAIEQADPANM
VEDEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLENMVIKLAKELPKDLPS
EEIKTGEEDDDENGDNLLKDSNDSPSIQSKAVTNSQMDEIAAKLGSQWKTLADHLEMSEK
EIRVIEADSEDVELQAKMLLVAWQDREGPQATMESLVTALTTAGFRNIADALNET
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgtctcacttcgacttcatcgaagccagagataaatttacggctgcagct
aaaagtgctgttgatctcaggaactgtaaaccactgaccaatgccttcagtcatctgcct
ggaaatgaaactgagaagaaggccactcttgatcaagccctgcgtggagttcttgaagag
caaatagtgaagaagaaagtgaatgttgaagatttcctttctctgatctacatcagtata
gatggagtgactgaaggcatctgctctgcttccactccttttcttctgctgggagacgtt
ctcgactgtcttcctctggatcagtgtgacaaaatcttcacctttgttgaagaaaatgtc
tctacatggaagtctaatacgttttactctgctggaaaaaattacttgttaagaatgtgc
aatgacctccttagaagactctccaagtctcagaatacagtgttttgtggacgaatccaa
ctgtttttagcacgtctcttccctttgtctgaaaaatcaggactgaacttacagagtcag
ttcaaccttgataacatcacggtgttcaacaaaaatgagcaggacagcacacttgggctg
cagcacacagaagttaaggaggatgggatggaggtggaggagggagagatgggtgatgaa
gatgcacctgctccgtgctccattcctattgactacaacttgtacagaaaattctggacc
ctgcaggactatttcagaaaccctgtacaatgctacgacaagttctcgtggatgactttc
cttaagtattcagatgagacactagctgtgtttaagagctataaactggatgacatgcaa
gcatcaaagaaaaagctgaaggagatgaggactgctgctggagaccatgtctactttgcc
aagttcctcaccagtgagaaattgatggaccttcagttgagtgacagcaacttcagacga
cacattttgcttcaatacctcatccttttccagtatcttaagggccaagtcaagttcaag
agttccagctgtgttttgaatgatgatcagtcttcgtggattgaggacacagccaaacta
gtctatcagttactgagagaaacccctccagacggtgacaaatttgcatctatggttgag
cacatcctgaatacagaagaaaactggaactcctggaaaaatgagggctgcccaagcttc
gtgaaagaaagaccagcagagaccaaacccatgcgccccagcagaaagagacaagcacca
gaggactttttggggaaaggacctgatcgcaaaattctcatgggaaatgaggaactcaca
agactctggaatctaaaccctgacaacatggaggcctgcaagtcagatagcagggaattc
atgccatcactggaggagttttttgaagaagctattgaacaggcagatccagcaaacatg
gtggaggatgagtacaaagttgtgcgtaactcaaactacggctggagagccttgcgactg
ctgtccaggaggagtcctcacttcttccagcccaccaatcagcagttcaagagtctggca
gactatctggaaaacatggtcatcaaactggccaaagagcttcctaaagaccttccttct
gaggagataaaaaccggtgaggaagatgatgatgagaatggagataacctgttgaaagac
agtaatgacagtcccagcattcagagcaaggcagtgaccaacagtcagatggatgagatt
gcagccaagcttggatcccagtggaagacactggcagaccatctggagatgagcgagaag
gagattcgcgtgatagaggctgacagtgaggatgtagaactacaggcaaagatgctactg
gtggcctggcaggaccgagaaggccctcaagcaacaatggagagcctggtcacggccctg
accacagctggattccgtaacatcgcagatgctctcaatgaaacataa
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