Ctenopharyngodon idella (grass carp): 127495642
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Entry
127495642 CDS
T08802
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM16-like isoform X1
KO
K12006
tripartite motif-containing protein 16
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cide04121
]
127495642
Ubiquitin system [BR:
cide04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
127495642
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
zf-RING_6
MRP-S31
TAN
DUF5446
Motif
Other DBs
NCBI-GeneID:
127495642
NCBI-ProteinID:
XP_051718551
LinkDB
All DBs
Position
2:complement(34252996..34256656)
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AA seq
569 aa
AA seq
DB search
MVRLSVSYYLCRKMAESSVSLAQDQFNCSICLDLLKDPLTIPCGHSYCMSCITGCWDQDD
QKGVYSCPQCRQTFTPRPVLGKNTMLAEVVEKLKQTKLQAARPAQCNTGSGDVECDICTG
DKKKAIKSCLVCLNSYCQNHLEQHEIFFKGKRHNLMDATGRLQEMICPQHEKLLEIFCRT
DQNCICYLCTMDVHKDHKIVSAAAERTEKQRQLEETQRTNQKRIEERQKELEDLREAVES
HKRSAQAAVEDSERIFTELIRSIDRSRSEVTQLIRDQEKAAVSQAEGRLEQLEQEIDDLK
RRDAELEQLSHTDHHIHFLQSFQSLSVPPGSTDSSRITVSSCLSFDDVGKSVSHLREKLE
HFCREEIEKISGKVTYIKILPTPELKTKEDFLQYFRQFTVDINTVNKRICLSEGNRVIKY
TDTVQSYPDHPDRFDSFTQVLCRESVCGRCYWEVEWSGKVGISVSYKSISRKGQGNECVF
GCNIESWRLFCSSSTCSFRYNKKKTELPVVSSSCRIGVYVDHSAGTLSFYSVSDTMTLIH
RVHTTFTQPLYPGFRVYDSFGSHISKVKL
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggtaagactgtctgtgagttactatttgtgcagaaaaatggcagaatccagtgtttct
ttggctcaggatcagttcaactgttcaatctgtctggatctactgaaggatccattgacc
attccctgtggacacagttactgtatgagctgtattacaggctgctgggatcaggatgat
cagaagggagtctacagctgtcctcagtgcagacagaccttcactccaagacctgtttta
ggtaaaaacaccatgctggctgaagtggtggagaaactcaagcagacaaaactacaagct
gctcgtcctgctcaatgtaacactggatctggagatgtggagtgtgacatctgtactggg
gacaaaaaaaaagccatcaagtcctgtctggtgtgtctgaactcttactgtcaaaatcat
cttgaacaacatgagatttttttcaaaggtaagagacacaatctaatggacgccactgga
cgactgcaggagatgatctgccctcaacatgagaaactactggagattttttgtcgtact
gatcagaactgtatatgttatctgtgtacaatggatgtgcacaaagatcacaagattgta
tcagctgcagcagagaggactgagaaacagagacagttagaggagacacagagaacaaac
cagaagagaattgaggagagacagaaggagcttgaggatctgagagaggctgtggagtct
cacaagcgctctgcacaggcagcagtggaggacagtgagaggatctttactgagctgatc
cgctccattgatagaagccgctctgaggtgacacagctgatcagagaccaggaaaaggct
gcagtgagtcaagctgaaggacgactggagcaactggagcaggagattgatgatctgaag
aggagagatgctgagctggagcagctttcacacacagaccatcacatccatttcctccag
agtttccagtctctctctgtccctcctggatctacagactcatccagaatcactgtcagt
tcttgtctctcttttgatgatgttggtaaatctgtgtctcatctgagagagaaactggag
catttctgcagagaggagatagaaaagatatctggtaaagtaacatacattaagatcctt
cccacacccgagctcaagaccaaggaggattttttacaatatttccgtcagttcactgtg
gacataaatacagtgaataaaagaatttgtctgtctgagggaaacagagtgattaaatac
actgacacagttcagtcgtatcctgatcatccagacagatttgatagtttcactcaggtg
ttgtgtagagagagtgtgtgtggacgctgttattgggaggttgagtggagtggtaaggta
ggtatatcagtatcatataagagcatcagcaggaagggtcagggaaatgaatgtgttttt
ggatgcaacattgagtcttggagattattttgctcttcctccacatgttcattccggtac
aacaaaaaaaagactgaactccctgtagtctccagctcctgtagaataggagtgtatgtg
gatcacagtgcaggaactctgtccttctacagcgtctctgacacaatgactctcattcac
agagtccacaccacattcactcagcctctctatcctgggtttagagtttatgattcattt
ggatcacatatttcaaaagtaaaactgtga
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integrated database retrieval system
