KEGG   Ctenopharyngodon idella (grass carp): 127500142
Entry
127500142         CDS       T08802                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide03030  DNA replication
cide03410  Base excision repair
cide03420  Nucleotide excision repair
cide03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127500142
   03410 Base excision repair
    127500142
   03420 Nucleotide excision repair
    127500142
   03430 Mismatch repair
    127500142
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cide03032]
    127500142
   03400 DNA repair and recombination proteins [BR:cide03400]
    127500142
Enzymes [BR:cide01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     127500142
    6.5.1.6  DNA ligase (ATP or NAD+)
     127500142
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     127500142
DNA replication proteins [BR:cide03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    127500142
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     127500142
DNA repair and recombination proteins [BR:cide03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     127500142
   NER (nucleotide excision repair)
    Other NER factors
     127500142
   MMR (mismatch excision repair)
    Other MMR factors
     127500142
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 127500142
NCBI-ProteinID: XP_051727047
LinkDB
Position
2:complement(34726283..34748901)
AA seq 994 aa
MQRSIASFFQPMKGKEKSDGQAKVKAEPVKSPLKIQNGIQESDSPIKKVHKRSRVIIDSD
DEDQPMVKEQVPKQSEVQTGKPKKISDVTKAASTPVSPKTPITPKTPITPTTPVTSSASV
AVVTPASSGTPGTPATPTSTSPSGIPKRKTARKQFPKRKLESRSDGEGTKEDEGKEVDGG
QESKRARVGASPGQTENEMMEVEEKSTDGKTVVDEQKDEDEAKTSEVVDRANNEMKQKDK
NDNKQEKKINKENAQKEKIEDKKKKKDNSPERVVKKEKGTEDEGGSAKKKPISSFFAPRK
AAVKLEKEERNVGEKKKDEEISDVTEQKETKSEKGVDSAVQSQYDPSRAQYHPIDHACWR
RGQKVPYLAVARTFEKIEEDSGRLRNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPAY
QGLELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPASLTAG
GVFNKLKEIANMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAA
LSQAVCLTPPGQEFPPAVLDAGKGMSAENRRVWLEEKALILKQTYCEMPNYDAIIPVLLK
EGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENG
EVRVFSRNQEDNTSKYPDIISRIPQVKKENVRSCVLDSEAVAWDREKKQIQPFQVLTTRK
RKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRALLRESFEEKEGEFVFARSLDAD
NTEAIAEFLEQSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVI
GAYLGKGKRAGSYGGFLLACYDEENEEFQSICKIGTGFKDEDLEQHYNFLKEHILPKPRP
YYRVDQSAEPDVWLEAVQVWEVKCADLSLSPIYKAAMGLVDPEKGISLRFPRFLRIRDDK
KPEDATTGSQIADLYKKQQQIQNQGEKPDLEDYY
NT seq 2985 nt   +upstreamnt  +downstreamnt
atgcagcgaagcatagcatcattctttcagccaatgaaaggcaaggagaagagtgatgga
caggccaaagtaaaggccgaacctgtgaaaagtcccctcaaaattcagaatggcattcag
gaaagtgattcaccaataaagaaggttcataaacgcagtcgagtaatcatagacagtgat
gatgaagatcagccaatggttaaagagcaggtgccaaaacagagtgaagttcaaacagga
aagccaaagaagatttctgatgttacaaaggctgcctccactcctgtatccccaaaaact
cccataaccccaaaaactcccataaccccaacaactccggtcacttcgagtgcctccgtt
gccgtggtaacccctgcttcctcaggcactccaggaactccagcaactccaacatcaact
tcaccgtcaggcattcccaaacgcaaaactgcccgcaagcagttccccaagaggaagctg
gaaagcaggagcgatggagaggggacgaaagaggacgaagggaaggaagtagatggaggc
caggagagtaagagagcacgagtgggggcctcacctgggcagacagaaaacgaaatgatg
gaggtggaagagaagagcacagatggaaagactgtagtggatgaacaaaaagatgaggat
gaagcaaaaacgagtgaagttgtggaccgtgcaaacaatgagatgaaacagaaagataaa
aatgataataagcaggagaaaaagataaataaagagaatgcacagaaagaaaaaatagaa
gacaagaaaaagaagaaagataacagtcctgaaagagtagtgaaaaaagagaaaggcaca
gaagatgaggggggatcggccaaaaagaaacccatcagcagcttttttgcacccagaaag
gcagctgtaaaactggaaaaagaagagcgaaatgtgggagagaaaaagaaggatgaagaa
atctctgatgtcactgaacagaaagagacaaaaagtgaaaagggggtggattctgcagtc
cagagccagtatgatccctccagagcacagtaccatcccattgaccacgcctgctggagg
aggggccaaaaagtgccatatttggctgtcgctcgcacctttgaaaagattgaagaggat
tcaggaaggctgagaaacattgaaactctttccaactttttgcgctctgtaattcttctc
tctccagatgacctgttatgttgtgtatacctgtgtctgaaccagctcggccctgcgtat
cagggtctggagctgggcgtcggggagactgtcctgatgaaagctgtcgctcaagcaact
gggcgacagttggacaaaatcaaggcggaggctcaggagaagggtgacctgggattggtt
gctgagagttcccgcagcaaccagagaatgatgtttgcaccggccagtctgacagcaggg
ggtgttttcaacaaactgaaagaaattgctaacatgagtggaaactctgcaatgaataag
aagattgacattattaaaggcttgtttgtggcatgtcggttttctgaggcccgatacatt
gtgcggtcactggcggggaagctgcggatcggattggctgagcagagcgttctcgccgct
ctcagtcaggctgtgtgtctgacgcccccgggccaagagttcccaccagctgtgctggat
gcagggaaaggaatgagtgctgaaaacaggagagtgtggctggaggagaaagcactgatc
ctcaaacagacatactgtgagatgccaaattatgatgcaatcattcctgtattgctgaag
gagggcatagatgaactgcccaatcactgcaagctcaccccaggtgttcccctgcgaccc
atgttagctcacccaactaaaggggtcggcgaggtaatgaaacgttttgatgaggcatct
ttcacctgcgaatacaaatacgatggagagagagcacagatccatattcttgagaacgga
gaggtgcgcgtttttagccgaaaccaagaggacaacacaagcaaataccctgatattatc
tcaagaatcccacaggtgaaaaaagagaacgttcgctcctgtgttctggattcagaggcg
gtggcctgggacagagaaaagaaacagatccagccatttcaggtcctcaccacgaggaag
aggaaggatgtggatgcatccgagatcaaggttcaggtgtgtgtctacgcctttgacctg
ctgtacctcaacggagagtctctggtgcgagagcctctaagcaaacgcagagctctgtta
cgggagagttttgaggagaaagaaggagagtttgtttttgctcgatccctggatgctgac
aacacggaagccatcgctgagttcctggagcagtctgtacgagattcttgtgagggtcta
atggtgaaaacattggaaaaacatgcaacttatgaaattgccaaacgatcccacaactgg
ctcaagctgaagaaggactatctggagggtgttggagacacagtggatctgtgcgtgatt
ggtgcttatctggggaaggggaagagagcaggcagctatggagggttcctactggcctgt
tacgatgaggagaatgaggagttccagtctatctgcaagattggaacaggcttcaaagat
gaagatctggagcagcattacaatttcttaaaggagcacattttacctaaaccacgcccg
tattaccgcgtggaccaatcagcagagccggatgtctggctagaggcggtgcaagtgtgg
gaggtgaaatgcgctgatctttcactgtctccaatctacaaggcagcgatgggattggtg
gacccagagaaaggcatttcactccgtttcccacgattcctgaggattagagatgacaaa
aaaccagaggatgccaccacagggtcacagattgctgatctctataagaagcagcagcag
attcaaaatcagggtgagaaaccagatctggaggactactattga

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