Ctenopharyngodon idella (grass carp): 127500517
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Entry
127500517 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03022
Basal transcription factors
cide03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127500517
09124 Replication and repair
03420 Nucleotide excision repair
127500517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127500517
03400 DNA repair and recombination proteins [BR:
cide03400
]
127500517
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127500517
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127500517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
127500517
NCBI-ProteinID:
XP_051727661
LinkDB
All DBs
Position
19:complement(21315581..21325059)
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AA seq
464 aa
AA seq
DB search
MKLRVQLQCKNLHEFLKELSPEILDRLYNHPATCLAVYRELPALAKNYVMRMLFLDHPLP
QAAVALWVKKDSQKDHDHCVSVLTGLRLWHSQQLQGGLQGFVLNPVFKDNLRIALLGGGK
PWADEGSNLGPDRHARDVESLDRYAMERWEVILHFMVGSPSAAVSQDLAQLLTQAGLMKN
EVGEAPCITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLSAGVTASPLDLLSALGAT
PGTGDTGFIVVETNYRVYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQAISNG
ITAQQIIHFLETRAHPIMLKQTPILPPTIKDQIRLWELEKDRLQFTEGVLYNQFLSQADF
EVLRDRAQGLGVLVWQNPAHRVMVVTPHGHSEVKRFWKRQKSHT
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttcgagtccagctgcagtgtaagaacttgcatgagtttctaaaggaattgagc
ccagagatcctcgacaggctctacaatcaccctgcaacatgcctggctgtatacagggaa
cttccagcattggcaaagaattatgtgatgcgaatgctgtttttagaccacccacttcca
caggccgcagttgcgctgtgggttaaaaaagacagtcaaaaagatcacgatcactgtgtg
tcggtgttaaccgggctacggctctggcacagtcagcagcttcagggtggactccaaggc
tttgtgctcaaccctgtgtttaaagacaacctgagaatagcactgctaggcggtggtaaa
ccatgggcagatgagggcagcaaccttggtcctgatcgtcatgcgagggatgtagagagt
ctcgaccgctatgccatggagcgttgggaggtcatccttcacttcatggtgggctctcct
agcgcagccgtcagtcaggatctggcccagctccttacacaggctgggctcatgaagaac
gaggttggtgaggctccttgtatcacatcagcagggtttcagttcctgctgctggacaca
gcatctcagctgtggtacttcaccctgcagtacctaaaaacagcacagtcgagaggaatg
gacctggtggagattctttcctttttgttccagctgagtttttccactcttggtagggat
tattctgtggagggcatgagtgagtctctgctaacatttttgcagcatctacgagagttt
ggtctggttttccaaagaaagaggaagtcaaggaggtactaccctacaaggttggccata
actctatctgcaggagtcacagcaagccctctggatctgctttctgcactaggagccaca
ccaggaacaggcgacacaggcttcatcgttgtagaaacaaattatcgtgtatatgcctac
acaaactctgaactccagattgcattggtagctctatttagtgagatgctgtatcggttt
cctaacctggttgttgctcaggtaaccagagagtcagtgcagcaagccatcagtaacggc
ataactgcacagcagatcattcacttcttagagacccgagcacacccaataatgcttaaa
cagacccccatccttcccccaaccataaaagatcagatcagactatgggagcttgaaaag
gatcgcttgcagtttactgagggagtgttatacaatcagtttttgtcccaagctgatttt
gaagtgttgcgggacagggctcagggtttaggtgtgctggtttggcagaaccccgctcac
agggtcatggtggtgacgccacatggacacagtgaggttaagagattctggaagagacaa
aagagccatacataa
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