Ctenopharyngodon idella (grass carp): 127512097
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Entry
127512097 CDS
T08802
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03022
Basal transcription factors
cide03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127512097
09124 Replication and repair
03420 Nucleotide excision repair
127512097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127512097
03400 DNA repair and recombination proteins [BR:
cide03400
]
127512097
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127512097
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127512097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Motif
Other DBs
NCBI-GeneID:
127512097
NCBI-ProteinID:
XP_051748664
LinkDB
All DBs
Position
5:27453168..27459489
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEVLKEDESGSLKATVEDILFQAKRKRVFESHGQVRLGMMRH
LFVIIDSSRSMEDQDLKPNRLTSTLKLMEYFVEEYFDQNPISQIGIIATKNKRAEKLTDL
AGNPKKHIAALKKAVDSTCVGEPSLYNSLNMAMQTLKHMPAHTSKEILVIFSSLTTCDPA
NIYELIKTLNGLKIRVSVIGLSAEVRVCTILTRETGGTYNVILDESHFKELLMQHVKPPP
ASSSSECSLIRMGFPQHVIASVSDQDAKPSFSMSHLDSTGEPALTLGGYYCPQCRAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLDAFQETPLQEYKGERFCEACQGELKEKSVFIC
LACKKVFCVECDLFIHDTLHCCPGCMQTDRTS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaaccagagagaacaaaacgctgggaaggaggatacgaacgaacatgggag
gtgctgaaggaggatgagtctggatctctcaaagctactgtggaggacattcttttccag
gcaaagaggaaaagagtttttgagagtcatggacaagttcggcttgggatgatgcggcac
ctctttgtgatcattgactcatctagatcaatggaagatcaagacctgaagcccaacagg
ctgacctccaccctgaagctgatggagtactttgtggaggaatactttgaccagaatcca
atcagtcagatagggatcattgccaccaagaacaaaagggcggagaagctcactgatctt
gcagggaaccctaagaagcatatagcagctctgaagaaagctgtggactctacgtgtgtt
ggggaaccgtccctctacaactctctcaacatggctatgcagactctgaaacacatgcct
gctcatacaagcaaagagatcctggttattttcagcagtctcactacctgtgacccagcc
aacatctatgaacttatcaaaactctgaatggtttgaaaatcagagtgtctgtgatcggc
ctgtcagcagaggttcgagtgtgcaccattctcacaagagaaaccggaggaacatacaat
gtgatactggatgagagtcattttaaagagctgctgatgcagcatgtgaagccgcctcct
gccagctcctcctcagagtgctccctcattcgcatgggtttccctcagcatgtcatagct
tcagtgtctgatcaggatgccaaaccctcattcagcatgtcgcacctagacagcactggt
gagccagcactcactctcggcggctactactgcccacagtgcagagctaaatacactgag
ctgccagtggagtgtaaagtgtgtggtctgactttagtttccgctcctcacttggcccgt
tccttccaccacctcttccccctggacgctttccaggagaccccactgcaggagtataag
ggagagaggttctgtgaagcttgccaaggagagttgaaagaaaaaagtgtgtttatttgt
ctagcatgtaaaaaagtgttctgcgtggagtgtgatctcttcatacatgacacactgcac
tgctgtcctggctgcatgcagactgacaggacgtcttga
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