Ctenopharyngodon idella (grass carp): 127514477
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Entry
127514477 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Pur_ac_phosph_N
Interfer-bind
DUF4992
Motif
Other DBs
NCBI-GeneID:
127514477
NCBI-ProteinID:
XP_051753308
LinkDB
All DBs
Position
6:complement(24540348..24598962)
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AA seq
2962 aa
AA seq
DB search
MGCLLQWTLLLAVLLCLPSCSTAQGQCNDVVAADIVFLVDGSSSIGRANFVLVKNFMAGI
VQPFARAVGPNGIRFGAVQYSDTARVEFTFTTYLNGTELITAIENINYKGGNTRTGAGLK
YIADNFFNPASIRDVPKITILITDGKSQDNVQEPSQKLRSLGVKIFAIGIKSADPTELNL
IASPPQSDFTSQIGNFKALSSLLPLVSRRVCTTSGGSYSSDEAYSGPSDLQFSGETTNSL
RFRWTSAGGPVSGYVVQYRPLSGLGQPITAELRQETIPSNQQSYIARELRSGTDYLITVI
AQYPNSLGESVSAKARTKPLLGVTTLRLVQAGFFTLALGWDAPADQVQGYRITYGPTGQP
SAQLKEQSAGAESTSLTLLGLKSDTEYVINLYPLFPRNSASPATLTARTLRLEGVQQLSV
ETISSNSVRVRWNGVTGARGYRVVWGPFTGSDVETVELRGDSESHTLGNLRPDTEYIVTV
IALYSGEAEGPAATARFKIERSEQQVLRATTTGPTSIRLNWNLIQAARGYRLEWKAGERG
RVQKQDFPQSTTNYELRNLQPSTEYIITLFTLYEGREEATFFSTKSTVEQSVGLVTNLRV
VDSLGNIVRIGWTGVAGATQYNIIILNTESNTEVNRRVPGNQTSFDLRDLEDGVRYAVSV
TALVGSNEGEPATVYIKTESPLRVTNLRVVGSNSRRVRIAWTGVSGATGYRVTWRQSNTA
EQFRVLSADITTYTIDGLQPDDTVVVGVAPVIDERTGEVVSVSTRTSGSTGIVTGLRVIE
VTSTRILITWTPVNRATGYKITWRRSDGVEDSENVPADVASFAIDRLQEGAAYQVLVSAL
FNSREGPTATVTARTDQAAVGRVTNLQVLEAQGEVVRVSWVGVQNATSYRILWKRTDGGE
ERSQLVGGNVTSVDLRQLDEGAQYEVKVLALVRNREGPPVSVRITTGEKRVTRVEGLRVL
DSTPGGLRITWRAVSGASSYRIYWRSSQGEPESSRLISGDATSYTLDGLRPGLSYTVRLS
AVLDGEETEATTIRGTTDTLPPVSGLSVTDSTENSVLLGWSPVTGATGYILRWTEEEGTG
TAQSETLPGTATSYRVIGLRLGRRYRFTVQPTFQNQVGPETSVEERTVCVGGRLDVVFLV
PASRDRSGLVAPVLSLLASSAGSFTSIGPRDSQMGVVMYSEDPKVRFLLNRHSNSETLLQ
DILSTPFNDRPGNNIGRAMTYARQFLLSTPAGRRSGVPGVVVIIADEKSTDDLSQPAAAV
KADGVTVLAVGIGRADPRELRLAVTDGSTQNLLYAQDANRLYGLHPELADLLCGLARGTG
VTTGPCTVECPRGHKGEQGQKGERGRDGVDGRKGEPGRDGLPGREGPRGPEGPPGQPGSG
LGVRGEKGERGFPGLDGSPGVPGRSGAVGLPGSQGLPGVRGDPGEPGLAGPQGLKGEKGE
RGEPGSAVGGGLPGRKGEPGIPGIPGTPGRPGVDGPKGEAGTRGLPGQDGRPGLSGSPGL
SIKGDKGSPGERGPPGVGSGVAAKGDAGEPGSPGPSGPPGLRGLTGQKGAKGEPGESAEG
KPGPQGNTGDPGDRGPRGPPGEIGSKGDRGQTGAPGLDGAKGDRGLPGPAGEKGDKGSAG
LPGPQGLRGLPGSNGLPGEKGNEGAKGEPGSSGPGSFGRKGERGERGLPGPDGAKGDKGD
AGQKGERGASGAGEPGQPGPKGDQGDRGLTGLSGKPGAKGSQGDPGERGEAGSPGSQGPM
GPRGKDGLKGDKGEDGISGESGLPGKPGERGLRGIPGQPGQPGPKGDMGDPGEDGRNGTP
GTTGPRGAKGEQGIQGPPGPPGDVTTGEKQLKGDRGEKGEAGDPGEHGAKGQKGEAGAPG
PAGQSGPEGQRGLPGARGDPGDRGSPGDKGERGAAGLDGRPGQDGKPGPPGVPGLRGDPG
KQGDPGRDGLAGLRGPQGPPGPPGPPGTDGTPGKAGEDGKPGLPGKAGEDGVPGEDGRKG
DKGEQGPAGRDGRDGIKGDQGIAGLIGPQGPIGPPGVPGNVGPPGPVVYVKGEPATSIPG
PQGPPGTPGVPGVPGAAGARGERGLPGLKGDVGDPGEDGKPGTVVDVKRAFSEFGIEVRE
LKLLIDDRSNLVSKFNELAEGKRGEKGDIGPRGPPGADGVRGLPGERGVKGEQGEKGPPG
PQGPPGRAIGERGPEGQPGQAGEPGKPGIPGVPGRAGELGEAGRPGDKGEKGEKGDRGQA
GPAGLPGLGGPPGQKGDSATAQNGLPGPRGLPGPQGIRGEPGAVGPPGSPGERGYTGARG
EKGDKGASGENGKDGSPGSTGDPGKPGLDGKPGLPGFPGVLGRPGNPGEPGIRGPTGPMG
GNGPPGAPGVKGDQGQPGIGVQGPPGPQGNRGLPGPAGTPGAIGPQGPPGLPGQVGEGGK
PGVPGRDGVPGKDGLPGLPGKLGIAGPIGPPGLKGEQGDSGPPGKSVTGPPGMKGETGPP
GQTLPGTIGERGLPGSPGPKGDKGPAGIKGERGAVGDPGDPGENGMRGPQGPKGVKGEAG
VGMPGPPGQLGPIGLKGDPGLPGPPGPPGPRGLDGTPGLAGQRGEAGQPGPPGPQGDRGL
QGFIGKAGNPGTPGAAGPPGPPGTAGLPGLKGDKGEIGVGVPGLRGERGDPGPRGEEGRA
GTDGDRGPTGPPGGKGNRGDKGEQGPSGIKGEKGDTLLVGGPPGEKGVKGETGERGPKGA
QGEKGAKGQEGPPGEQGLRGEPGERGSTGFQGARGPGGQKGEAGQPGVPGEAGTPGKDGL
PGMRGEKGEVGHVGLRGLKGERGSKGVCGPSGQKGDKGDAGINGRPGLPGRKGEQGEVGS
QGPTGSPGKEGLIGAKGDRGFDGVMGPKGTQGEKGERGPPGIPGSPGPRGMDGPPGLTGA
QGPAGGKGPEGLQGQKGERGPSGPAMVGPRGIPGIPGERGEQGEIGPDGPKGDRGEPGMT
EDDIRAYVRTEMNLHCACGGKL
NT seq
8889 nt
NT seq
+upstream
nt +downstream
nt
atggggtgtttgctgcaatggactctgctacttgctgtgttgctgtgtctcccgtcatgc
tctacagctcaaggccagtgcaatgatgttgttgcagcagacattgtgttcctggtggat
ggatcatccagtattggcagggccaattttgtgttggtcaagaatttcatggcagggatt
gtccaacccttcgccagagcagtaggacccaatggcatccgttttggagcagtacagtac
agcgatactgccagggtggagtttacgtttactacttacctgaatggaactgagctcata
actgccatagagaatattaactataaaggtggaaatacgcgcactggggctggtctcaaa
tacatcgcagacaacttctttaaccctgcctctatcagagatgtacccaagatcactatt
ctcattactgatggtaaatctcaggacaatgtgcaggaaccttcacaaaaactacgtagc
ctaggagtcaaaatatttgcaattggtataaagagtgcagatccaactgagctaaatctc
attgcctctccccctcaaagtgacttcacctctcaaattgggaacttcaaagctttgagc
tctttgcttcccctagtatctcgacgcgtgtgtacaacaagtggaggctcttactcaagt
gatgaggcctacagtggtccatcagacttgcagttttcaggtgagaccaccaattcactg
agatttcgatggacatctgcaggagggcctgtaagtggctacgtggttcagtacaggccc
ctatctggcctcggtcagccaatcacagcagagctccgacaggaaacaataccaagcaac
cagcagagctacattgcacgagagctgcgttcgggcacagactacctgatcaccgttatt
gctcagtacccaaacagcttgggagaatcagtgtctgccaaggcccgaacaaagcctctt
ctgggtgtgactacactgcgactagtccaggctgggttttttactttggcattgggctgg
gatgctccagctgaccaagtacagggctacagaatcacttatggacctacaggtcagcct
agtgcacagctgaaggaacagtctgcaggggcggagtctacttctctgactttgcttggt
cttaagtcagacacagaatatgtgatcaacttgtaccctctatttccccgcaacagtgcc
tcaccagctaccctgactgcccgtacattgcgtttagagggagtgcagcagctctccgtc
gagaccatctcaagcaacagtgttcgagtccgctggaatggagtgacaggggccagagga
tatagagttgtttggggccctttcacaggaagtgatgtggagaccgtagagctgagaggt
gatagtgaatctcacactctggggaatctgaggccagacacagagtacatcgttacagtc
atcgccctgtacagcggagaagctgaaggacctgcagccactgcacgttttaaaatagag
cgctcagagcaacaggtcctgagagccacgactacaggacccaccagcatcagattaaac
tggaacctcatacaggcagccagaggctaccggctggaatggaaggccggagagcgaggc
agagttcagaaacaagatttcccacaaagcaccaccaactatgagctcagaaatctgcag
ccgagcaccgagtacatcataactctattcacactctacgagggccgagaggaagctact
ttcttttcaaccaaatcaacagtagagcagtcagtcggtcttgtcacgaacctgagagtg
gtggactcacttggaaatattgtacgaataggatggacaggagttgctggggcaacgcaa
tacaacatcatcatacttaatacagaatcaaatacagaagtgaacagaagagttcctggg
aatcagacctcctttgacctacgggacctcgaagacggtgtacgctatgctgtcagtgtg
acggcactagtcggctccaatgaaggggaaccagcaacagtgtacattaaaacagaatca
ccactgagggtgaccaacttgcgggtagttggcagcaatagtcgacgagtcaggattgca
tggactggtgtttcaggggcgacaggctaccgagttacctggagacaaagcaatactgca
gagcaattccgtgtcttaagtgccgatatcactacctacactatagacgggctacagcca
gatgatactgttgttgtgggtgttgccccagtgattgatgagcgaactggagaagtggtc
tctgtgtctactagaaccagtggttctactggaatagtcacagggctacgagtcattgaa
gtaacatccacaaggatactaataacctggactcctgtgaatagagcaacaggctataaa
atcacctggcggcgtagtgatggagtggaagactctgagaatgtgcctgctgatgtggct
tcctttgccattgatagactccaggaaggtgcagcctaccaagtattagtctcagccctt
tttaactcacgggaaggacctactgccactgtgactgcaaggacagatcaggccgcagtg
ggtcgtgtcaccaatttacaggtgctggaggcccaaggggaggttgtacgagtcagctgg
gttggagttcaaaatgcgacatcatacagaatactctggaagaggacagatggtggagag
gagcggagtcagctggttggtggtaacgtgacatcagtggatctgaggcagttagatgag
ggggcacagtatgaggtgaaggttttggctctggtccggaacagagagggcccacccgtc
tctgtcagaatcaccacgggggaaaagagagtgacaagagtagagggtttgcgtgttttg
gactcaaccccagggggacttcgtataacctggagagcagtgagcggagccagctcatat
cgaatctattggaggtcttcacaaggtgagcctgaatcaagtcgtctaataagtggtgat
gcaacttcgtataccctcgatggactgcgtcctggtctgagctacactgtaagattgtct
gctgtgctggacggcgaagagactgaagctaccaccatcagaggaaccactgataccctg
ccacccgtaagtggtttgagtgtgacagacagtactgagaattcagtccttttaggctgg
tcaccagtaactggagccacaggctatattttacgctggacagaggaagaaggcacagga
acagctcagtctgaaacgctgcccggaacagccacctcttaccgtgtgattggtctacga
ctgggtcgtcggtaccgtttcactgtgcaacccaccttccaaaaccaggttggacctgag
accagcgtggaggaacgaacagtgtgtgttggaggccgtttggatgtggtcttccttgtc
cctgcgtctcgtgatcgctctggcctggtagctcctgttttgtctctgttggccagttct
gctggatccttcacctccatcggtcccagagactctcagatgggggtggtgatgtacagt
gaagatccaaaagtgcgcttcctcctcaatcgtcatagcaacagtgaaacccttctgcag
gatattttgtccaccccattcaacgacagaccaggaaataatataggccgggcaatgaca
tacgcacgtcagtttttgctgagcacgccagcaggtcgaaggtctggcgttcctggagtg
gttgttattattgctgacgagaaatcaactgatgatcttagtcaacccgctgccgctgtt
aaagccgatggtgtgacagtgttggcggtaggaattggacgtgcagaccctagagagctg
cgtttggcagtgactgatggcagcactcagaatctgctctatgctcaagacgcaaatcgg
ctctatggcctccaccctgaactggcagacctcctttgtggccttgcacgagggaccggt
gtcacgacagggccttgtactgtagagtgccccaggggtcataaaggggaacagggtcag
aagggtgagagaggcagagatggagtggatggaaggaaaggcgagcctggtcgtgatggt
ttaccaggtcgtgagggccccagaggaccagaggggccaccaggtcaaccaggcagtggt
ctgggagtgagaggagagaaaggcgagagaggtttcccaggattggacggcagtccaggt
gttccaggtcgttctggtgcagttggactaccaggcagtcagggattaccaggtgttaga
ggagaccctggagaaccaggtcttgcagggcctcagggattgaagggagagaaaggtgaa
aggggggaacctggatctgctgttggaggaggtttaccgggccgtaaaggagaaccagga
atcccagggatccctggcactcctggtcgtccaggtgtggatgggccaaaaggagaggca
ggtacacgaggtctgcctggtcaggatggtcgccctgggttatcaggctctccaggactt
tctattaagggtgacaaaggcagccctggagagaggggtcctcccggagtgggcagtggg
gtagctgctaaaggagatgccggtgaacccggaagtcctggaccttctggtccgccgggc
ctacgaggactgactggacaaaaaggagctaaaggagaacctggtgagagtgctgagggt
aaaccaggcccccaaggaaacaccggagaccctggtgatcggggtccccggggacctcca
ggtgaaatcggaagtaagggtgaccgaggacagactggagcacctggtttagatggagcc
aagggtgacagaggccttccaggtccagcaggagaaaagggagataaaggttcagcaggc
ctccctggacctcaaggactgaggggtttgccagggagcaatggccttcctggagagaag
ggcaacgagggtgcaaaaggggaaccgggaagcagtggtccaggttcatttgggagaaaa
ggagagcggggtgaaagaggccttccaggtcctgatggtgctaaaggtgataaaggagat
gctggacaaaaaggggaaaggggtgcctctggagcaggagaacctggccaacctggacct
aaaggtgaccagggcgatcggggtctcactggattgtctggaaaacctggtgcgaagggc
agtcaaggtgacccaggggagagaggggaggcaggcagtcctggttcacaggggcccatg
ggccccagagggaaagatggactaaaaggagacaaaggagaggatggtatttcaggagaa
tcagggttgccaggtaaaccaggggagagaggtctaagaggaataccaggtcaaccaggt
caacctgggccaaaaggagacatgggtgatccgggggaagatggacgaaatggtacccca
ggcaccaccggaccaagaggcgcaaagggcgagcagggaatacaaggtccccctgggccg
cctggagatgtgacgactggagagaaacagctaaaaggtgacagaggagaaaagggagag
gcaggtgacccaggggagcacggggctaaaggtcaaaagggtgaagcaggagcgccaggc
cctgcaggacaaagcggtcctgaagggcagcgtgggctaccaggagccagaggtgaccca
ggcgataggggcagtccaggagacaagggagaaagaggagcggctggtttggatggacga
cctggtcaggatgggaaacctggtccgcctggagttcctggattacggggtgacccagga
aaacaaggggatcctggacgagatggcttggcgggactaagagggcctcaggggcctcca
ggaccccctgggcccccaggaactgatggcacacctggtaaagcaggggaggatgggaaa
ccaggactgcctggaaaagctggcgaggacggcgtgccaggagaggatggtcgaaaggga
gacaaaggagagcaggggcctgctggaagagatggtcgagatgggataaaaggtgatcag
ggcattgcaggacttattggcccgcaaggtcccattggaccccctggagttcctggaaat
gtcggaccaccaggacctgtggtctatgtaaaaggggagccagcaacgtctattccaggg
ccccagggccctccaggaacccctggagtacctggagttccaggagctgctggagcaaga
ggggaaagaggtcttccaggcttgaaaggagatgtgggtgatccaggagaggatggcaaa
ccaggaactgtagtggatgtgaagagagcgttctcagaatttggcattgaggtcagagaa
ctgaaactattaattgatgaccggagcaatctggtgtcaaagttcaatgaactggccgag
ggaaagaggggtgaaaaaggagatattggacctagaggccctccaggagcagatggtgtg
cgaggtcttccaggtgagcgaggtgtgaaaggagagcagggtgagaaagggccgcctggc
ccacagggtcctccaggcagggcaattggggagagaggtccagagggtcagccaggacag
gcaggtgaacccggaaagccaggaataccaggagtaccaggacgagccggtgaacttgga
gaagccggcagacctggggacaagggagagaaaggggagaaaggggacagagggcaagct
ggtccggctggattgcccggcctaggagggcctccaggacagaagggcgattctgccacc
gctcaaaatggtttgcctggcccaaggggtctgccaggcccccaaggtatcagaggtgag
cctggagcagtagggcctccgggatccccaggagagcggggctacacaggtgctcgtggg
gagaaaggggacaaaggagccagtggagagaatggaaaagatggctccccaggaagtaca
ggagatcctggaaaaccagggctggatgggaagccgggcttgcctgggttcccaggagtg
ctgggcagaccggggaatccaggagaaccaggaataagaggaccaactggtccgatgggc
ggaaatggacccccaggggctcctggtgtgaagggtgaccaaggacaaccaggcattgga
gttcaaggccctcctggacctcagggcaatagagggttacctggacctgcaggcactcca
ggagccataggaccacaaggacccccagggcttccaggacaagtgggagaggggggcaag
cctggggtcccaggaagagatggtgttccagggaaagatggcctgccagggttacctggg
aaactgggtattgctggacccatcggccccccaggacttaaaggagagcaaggagacagc
ggtccaccaggaaagtctgtcaccggaccccctggaatgaagggtgagacgggtcctcct
ggtcagacattgccaggcactattggagaaagaggccttcctggatcaccaggcccaaaa
ggagacaaggggccagcgggaataaaaggagaaagaggtgctgtgggtgatcctggagat
cctggggaaaatggaatgagaggaccacaaggacccaaaggagtcaaaggagaggcaggt
gtggggatgcctgggcctccaggacaacttggacccatcggcttaaagggtgaccctggc
ttaccaggtcctccaggccctcctggaccacgtggattggatgggacaccaggactggca
gggcagagaggcgaagcaggtcagccaggaccccctggaccacaaggagacaggggtcta
caaggatttataggcaaagcaggaaacccaggaacacctggagctgctggaccaccagga
ccccctggtactgcaggccttccgggactcaagggagataagggtgaaattggagtaggg
gtgccaggtctaagaggagagcgaggagaccctgggcctcggggagaagaaggtcgggct
ggaacagatggagacagaggccctactggtcctcctggcggtaaagggaacagaggagat
aagggcgagcaaggtccttcgggaataaaaggcgaaaagggagatactctgctggtgggg
gggcctccaggagagaaaggagtgaaaggagaaaccggggagcgaggacctaagggtgca
cagggggaaaagggtgcaaaaggacaagaaggaccaccaggagaacagggtctgagaggt
gagccaggagagagaggctccactggtttccaaggagcccgtggtcctggtggtcagaag
ggagaagcagggcagcctggcgtcccaggtgaagcgggaacacctggtaaagatggcctg
cctggcatgagaggagagaagggagaggttgggcacgtaggtctgcgaggcctcaaggga
gaacgaggctccaagggggtatgtggaccaagcggacaaaagggagacaagggagatgct
gggattaatggcagaccaggattgccggggaggaaaggagagcagggtgaagtcgggtct
caaggtccaacaggaagtccagggaaggaggggctcattggagccaagggtgacagaggc
tttgatggagttatggggccgaagggaacacagggagagaaaggtgaacggggcccacct
ggtatccctggctctcctggtccgagaggtatggatggaccacctggtctaacaggcgct
caaggacctgctggaggtaaaggtccagagggtctgcagggacaaaagggagaaagaggt
ccatcaggccctgctatggttggcccacgtggcataccagggatcccaggagagagagga
gaacagggtgagataggccctgatggacctaaaggagacagaggagaaccaggcatgacg
gaggatgatattcgggcttatgttcgaactgagatgaacctgcattgtgcctgtggaggt
aagttgtga
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