Ctenopharyngodon idella (grass carp): 127519431
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Entry
127519431 CDS
T08802
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127519431
03015 mRNA surveillance pathway
127519431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127519431
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127519431
mRNA cycle factors
P-body specific factors
127519431
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
127519431
NCBI-ProteinID:
XP_051763088
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All DBs
Position
9:17096644..17106135
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AA seq
481 aa
AA seq
DB search
MRSEKEQRTGSRERGSVEIQFRDCQREQDNVAVNPKHKEEKKEIFTKVVIRRLPPSLSKD
QLEEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNQEDIIIFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKEIKIKLLKKCDRDDDVDSDRLKDKGDSGEIEKNRWEKSAGHTKSK
DSKDNRSQIESDKEQREGHGRRQRDKEHRGRDEERKRQRHHYEFDKFMRRKEETKWGKGY
CQDRAKKEQHHGYSYCPETGDKLGKEDREDLGSRKERIRNKSVLAHQEKRTSQSEGPDQI
GGALPAKDRPAMQLYQPGARNRKRMGSGNKAFDFPPISPEHGGEHCYKTVIGTGSEKSAD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggagcagaggacaggaagcagggagagaggcagcgtcgagattcag
ttcagggattgtcaaagggagcaggacaacgtcgcggtgaacccgaagcacaaggaggag
aaaaaggagatattcaccaaggttgtcatacgccgactgccacccagtctatcaaaagac
cagctcgaggagcatctgagtcctcttccatcttttgactattttgagttcttccccgct
gatcagagcttatatccgcatctcttctcaagagcatacatcaacttcaaaaaccaagag
gatatcattattttcagagatcgttttgatggctacgtattcattgacaataaaggccaa
gagtatccagctgttgtagaatttgccccatttcagaaggtttccaagaaaaagttaaag
aagaaagatgctaaagcaggaactattgaagaagacccagaatacaggcgatttctggaa
aactactcttgtgatgaagagaaatccatggccaacccagaaacactactgggagagatt
gaagctaaaacccgagaacttatagccaaaaggacgacacccttgttggaatacatcaaa
aacaagaaattggagaaacagagaataagagaggaaaaaagagaggagaggcgaaggaga
gaactggaaaagaagcggcaaagggaggaggagaagaggaaacgcagagaggaggagaga
cgaaagcggaaggaggctgaaaagcagaagaaactgtctgaaaaagagattaagatcaag
cttttaaagaagtgtgaccgagacgatgatgtggactcagacagactgaaagataaagga
gacagtggagagatagaaaagaacagatgggaaaagtcagcaggacacactaagtcaaag
gattcgaaggataataggagtcaaatcgaaagtgacaaggagcagcgggaaggtcacggc
cgtcggcagagggacaaagagcatcgcggcagagacgaggaacgtaaacgtcagaggcat
cactacgagtttgacaagttcatgcgacgcaaggaggagaccaaatggggcaaaggctac
tgccaggacagggccaagaaagaacaacatcatggctattcctactgtccagagaccgga
gacaaactgggcaaagaagatcgagaagacctgggcagcaggaaagaacggattcgcaat
aagtctgtgttagcgcatcaggagaaaaggacttcccagtctgaggggccagaccagata
ggaggggctctgccagcaaaggaccgaccagcaatgcagctgtaccaacctggtgccaga
aaccgcaagcgcatgggctccgggaacaaggcctttgacttcccgccgatctctcctgag
cacggaggagaacattgctacaagacggtcattggtacaggctcagaaaagagtgctgac
gagtga
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