Ctenopharyngodon idella (grass carp): 127519927
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Entry
127519927 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127519927
03036 Chromosome and associated proteins [BR:
cide03036
]
127519927
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
127519927
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
127519927
SLIK complex
127519927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
127519927
NCBI-ProteinID:
XP_051763520
LinkDB
All DBs
Position
10:25106611..25138036
Genome browser
AA seq
1794 aa
AA seq
DB search
MDARSEDESVSNSSGESSNSDDESGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSGSQ
SDSDSEKSKEKNDQDNKIDGAAFWKSNPSILTVQRSAMIRKQQLQQQQQIQQQSSSNTGS
DEDSSSSDESDDDSKSRSKGSGSDSDSGSGSGSGSSDSSAEENSDESVSDYEPSHKVKSR
KPSNKANARNGRNNKAPKKKPSRSSSDDEDDYKKALAGPRRQATVNVSYKEDEELKTDSD
DLVEVCGEDVPPPEEDEFETLERVMEIRIGRKGATGAVTTVYAVEADGDPNANFDPNRQP
GDVQYLIKWKNWSHIHNTWETEETLKQQNVKGMKKLDNFKKKDQEKKKWLKAASPEDVEY
FNCQQELMDDLHSQYQIVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGALIARKF
QKCIDEYMCRNQSKTIPFRDCKVLKQRPRFVPMKKQPLYIGGDGLELRDYQLDSLNWMAH
SWCKGNSCILADEMGLGKTIQTISFLNYMFNEHQLYGPFLLVVPLSTLTSWQREIHLWAP
QMNVVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGNVSWAFIGVD
EAHRLKNDDSLLYKTMMEFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWELFEEE
HGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAVQKQYYKWILTRNY
KALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNRQEGLQHLIRNSGKLVLLD
KLLVRLKERGHRVLIFSQMVRMLDILAEYLKYRQFLFQRLDGSIKGEMRKQALDHFNADG
SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVT
KGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSTPFNKEELSAILKFGAE
ELFKEQEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSVMEDEEIDM
DTERNVKNWDDIIPEEQRRRLEEEERQKELAEIYLLPRMRKCAKQINFNGNEGRRSRNRR
YSGSDSDSVSDRKRPKKRGRPRTIPRENIKGFTDAEIRRFIKSYKKFGGPLERLDAIARD
AELVDKSEHDLRRLAETVHNGCLRTLRENPCGPERTSGGRRGKVKGPTFRISGVQVNAKL
VISHEEELAPLHKAIPADPEERKRYIIPCHSKAAHFDIEWGKEDDSSLLIGIYEYGYGSW
EMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQKQAGTANSRK
RKPRGKKNKAVKQKMDDVTNSLSSAPPSDKSSEEEDEKEEEEKETPPVKPPNRRARMSER
AVKEEEEEEDEEESDEDEFEDKEPVEKDVPEKVVKKEIKKEKKEEGRDSKEREPKEKELK
PEPVHREEETPAEAVEVKAEVREKKADTPVHTPTGGDAIPLSEESEELDQKTFSVCKERM
RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLREYTNPEQIKQWRKNLWIF
VSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTSTVNTQSFKHADVERIKESQQDDSSR
DSYSSDRHHSSRYHEHSKERHPADLYRKSSDSRKRPYSSFSNGKDHRERERERERDQYGE
RGERQDSRYYSDNKHRKLDEHRSSREHRSESNSKDRTHSEHRFHSEHRPGSDYTHHKSSR
DYRYHSDWQMEHRLSGSGPRSPRDQRSPLGHRSPFEYSSDHKSTPEQVWSSRKT
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atggatgcacgcagtgaggatgaaagtgtcagcaacagcagcggagagtccagtaattca
gatgatgagtctgggtcaggatcaggttcgggctcgggctcgagttcaagcagtagcagt
tctagcagtagccaatcagggagcagtgactcaggaagtggctcggattctggaagccaa
tcagactcggactccgagaaatccaaggaaaagaatgatcaagacaacaaaatcgatgga
gcagcgttttggaagtccaaccctagtatcctgacagtacaaaggtcagccatgatcagg
aagcaacagctacagcaacagcagcagatccagcagcagagctcttcaaacactggctca
gacgaggactcttccagtagtgatgagtcagatgatgattcaaagagcaggagtaaaggg
tctgggtcagactctgactcgggatcgggttcaggaagtggctcatcggactcttcagca
gaggagaacagtgacgagtcggtgtcagactatgagcccagtcacaaagtcaagagcaga
aaaccttcaaacaaggccaatgccaggaatgggagaaataacaaagctcctaagaagaag
ccctcccgctcctcctcagatgatgaggacgattataaaaaagccctagcagggcctcgg
cggcaggccacagtcaatgtgagctacaaagaagatgaagaactgaagactgattcagat
gacctggtggaggtttgtggagaggacgtcccgccaccagaagaggacgagtttgagaca
ctggagagagtcatggaaattaggataggtcgaaaaggagcgacgggagctgtaaccaca
gtgtatgccgtagaggcagatggagaccccaacgccaactttgaccctaacagacagcca
ggagatgtgcaatacttgatcaaatggaagaactggtcccacattcacaacacctgggag
acagaggagacgctcaaacaacagaacgtcaagggcatgaagaaactggacaacttcaag
aaaaaagaccaggagaagaagaaatggctcaaagcagcctcacctgaggatgtggagtac
ttcaactgtcagcaggagctcatggatgacttgcattctcaatatcaaatcgtggaaaga
atcattggacattcaaatcaaaagtctgccgcaggttatccagattacctttgtaaatgg
caggggctgccatactctgagtgcagttgggaagacggtgctcttattgctagaaagttt
caaaagtgcatcgatgaatacatgtgccggaaccaaagcaaaaccatccccttcagagac
tgcaaggttttaaaacagagaccacggtttgtacccatgaagaagcagcctctctacatt
ggtggagatggcttagaactgcgagactatcagttggacagtctgaactggatggcccat
tcctggtgcaaaggaaacagttgtattttggcagatgagatgggtctgggcaaaaccatc
cagaccatcagtttcctcaattacatgttcaatgagcaccagctttacgggccctttctt
ctggtggtgcctctgtctaccctcacatcctggcagagggagatccatctctgggctcct
cagatgaatgttgtggtgtacctgggagacatcaacagcagaaatatgatccggacacat
gaatggatgcatccgcagaccaagcgactgaagttcaacattctgcttactacatatgaa
attctgctgaaggataagtcatttttaggaaacgtcagctgggcgttcattggtgtcgac
gaggcccatcggcttaagaacgatgactctctcctctacaagactatgatggagttcaag
tccaaccacaggctcctgatcactggcacacccctccagaactcactcaaagagctctgg
tctcttctacactttattatgcctgaaaaatttcactcgtgggagctgtttgaagaggaa
catgggaagggcagagactcaggctataccagccttcataaagagctggagcctttcctg
ctgcgcagagtgaagaaagatgtggagaaatctttgcctgccaaggtggagcagatcctc
agggtagagatgagtgctgttcagaaacaatactacaagtggatattgacaagaaactat
aaagcccttagtaaaggcactaaaggaagcacgtcaggcttcctcaacatcatgatggag
ttgaagaaatgctgtaaccactgctacctcattaaaccccctgatgacaacgagttctac
aacagacaagaaggcctgcagcaccttattcgcaacagtgggaagctggttcttttggat
aaactgctggttcggctaaaggaacgagggcaccgtgtactcatcttctcccaaatggtt
cggatgctggacatcctagcggagtacctaaagtaccggcagttcttattccagcgactg
gatggttccataaagggtgaaatgaggaagcaggcgttggatcactttaatgctgatggc
tctgaggatttctgctttttgttgtccacgcgagcgggtggtctgggcattaatctggcc
tctgcagatacggtggtcatttttgactctgactggaaccctcagaatgacctgcaggcc
caggccagagctcacaggattggtcagaaaaaacaggtgaatatataccgtctggttacg
aagggctcagttgaggaggacattattgagagagccaagaagaaaatggtgttggaccac
ctggtgattcagaggatggacaccacgggaaagacggtcctccatacgggtgctgctcct
tcaagttccactccattcaacaaggaggaactgtcagccatcctgaagtttggtgctgaa
gaacttttcaaagagcaggaaggagaggagcaggaacctcaggagatggatattgatgaa
atcctgaaaagagcagagaccagggagaacgatcctggaccgtcgactgtaggagaagag
ctcctctcacaatttaaggtggcgaatttctctgtgatggaggatgaggaaattgacatg
gacacggagcggaatgttaagaactgggatgacattatcccagaggaacagcggaggaga
cttgaggaggaggagcgacaaaaagagcttgcagagatctatttactgccccgcatgagg
aaatgtgctaaacagatcaactttaatgggaatgagggcagacgcagccggaacagacga
tactctggttcagacagcgattcggtctccgacagaaagaggcccaagaaacgaggaaga
cctcgaactattccaagagagaacattaaaggtttcactgatgctgagatacgcagattt
atcaaaagttacaaaaaatttggtgggcctttagaaaggctggatgctatcgctcgtgat
gctgagttagtggataaatcggagcatgatctgcggcgcctggctgagaccgtacacaac
ggctgtttgagaacgctaagggagaacccctgtggacctgaaagaacctcaggaggcagg
cgagggaaggtgaagggacccactttcaggatctcaggggttcaagtcaatgctaagctg
gtgatctctcatgaggaggagctggcaccattacataaggccattcctgctgacccagag
gagaggaagaggtatataatcccatgccactcaaaggcagctcattttgacattgagtgg
ggtaaagaggacgactccagcctgcttattggaatctatgagtatggatatggaagctgg
gaaatgatcaagatggacccagacctcaacctcacacataagctccttccagatgatcct
gacaagaagccacaggccaaacagctgcagacacgagctgactacctcatcaaattactg
agcaaagacctcgccaagaaggaagcacagaaacaggctggcacggcaaattcacgcaag
agaaaaccacggggcaaaaagaataaagctgtaaaacagaagatggatgatgtgacgaac
agtctgtcctctgcaccgccatcggataagagctctgaagaagaggatgagaaagaggaa
gaggagaaggaaactcctccagtgaagccacccaacagaagagcacgcatgtcagagcgg
gcagtaaaagaggaggaagaggaggaggacgaggaagagtctgatgaggatgagtttgag
gataaagagccagttgagaaggatgtaccagagaaagtggttaagaaagagattaagaag
gagaagaaagaggagggccgtgacagcaaagagagagaaccaaaagagaaggagctgaag
ccagagcctgtgcatcgagaggaagaaactcctgcagaggctgtagaggtgaaagcagaa
gtgcgggaaaagaaggctgacacccccgtgcacacgcccacaggaggagatgcaattcct
ctgtctgaggagtctgaagaactggaccagaaaacctttagcgtgtgtaaggagcgcatg
aggcctgtgaaggcagcactgaagcagttggatcgtccagagaaggggctatctgagcga
gagcagctggaacatacgcggcaatgcctgatcaaaataggagatcacatcactgagtgt
ctgagagaatacaccaaccccgaacagatcaaacagtggaggaaaaatctgtggatattt
gtttcgaaattcactgaatttgatgcaaggaaactgcataaactgtataagcacgccatc
aagaaaagacaagaaaatgctcaggcaatggagcagaacactagcactgtaaatacacaa
agctttaaacacgcagatgttgagcggataaaggagtcacagcaggacgacagcagcaga
gacagctacagctctgacagacatcattcatctcgctaccatgaacacagcaaagaacgt
caccctgccgacctgtacaggaagagctcagactccaggaagagaccctactcctccttc
agcaacggcaaagaccatcgagagcgagagagagagagagagagagaccagtacggagaa
agaggagagcgacaggatagcaggtactacagtgacaacaagcacaggaagctggacgag
caccgctccagcagagagcaccgatcagaaagcaactccaaggaccgaacgcactccgaa
caccgctttcactctgagcaccggcccggctctgactatacgcatcacaaatcgtcccgg
gactaccgctaccattcagactggcagatggagcaccggctgtcaggtagcggcccgcgc
tcgccccgagaccagcgctcgccgctcggacaccgctcgccctttgagtactcgtccgac
cacaaaagcacacccgaacaggtctggagcagccgcaagacataa
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integrated database retrieval system
