Ctenopharyngodon idella (grass carp): 127522748
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Entry
127522748 CDS
T08802
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127522748
03015 mRNA surveillance pathway
127522748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127522748
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127522748
5.6.2.5 RNA 5'-3' helicase
127522748
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127522748
mRNA cycle factors
Common to processing body (P body) and stress granule
127522748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
YusW
Motif
Other DBs
NCBI-GeneID:
127522748
NCBI-ProteinID:
XP_051768978
LinkDB
All DBs
Position
2:41087129..41110912
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSNTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgactttacgttg
cccagccagacccaaacgcagggccagacccagagtcagctcgacaaccaggtgaacggg
ccggatggagttctgcccaacggagaggatgcggtggtgaagaccagccaacttctggct
gagctgaactttgaggaggatgaggaagatacttactacactaaagatctgccagtgcac
gcctgcagttactgtggcatccatgatccagcatgtgtggtctactgcaacaccagcaag
aaatggttttgcaatggccgggggaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgcaaggaggtgacgctgcataaggacggaccgctgggagagacggttctg
gaatgctataactgcggctgccgtaatgtcttcctgctcggcttcatcccggctaaagca
gactccgttgtggtgcttctgtgcaggcagccgtgcgccagtcaaagcagtctgaaggac
attaattgggacagctctcagtggcagccgctcatccaggaccgctgctttctgtcctgg
ttggtgaagatcccgtccgagcaggagcagctgagggcccgtcagatcacggcccagcag
attaacaaactcgaggaactctggaaggaaaacccaactgcgaccctagaagatttggag
aaacctggagtggatgaggagcctcagcacgttctgctacgctacgaagatgcctatcag
taccagaacatttttgggccgctggtcaaactagaggctgactacgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttggggctgaataaaaagcgg
atagcttatttcactctgcccaagacggactcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctataaaggagacttggctccgctatggaaaggaatcggacacgtc
atcaaagtcccggacaattatggagatgaaattgccatcgagctgcgcagcagtgcaggt
gcacctgtggaggtgccgcacaacttccaggtagactttgtctggaagtcgacatctttt
gacagaatgcagagcgccctgaagacgtttgctgtggatgagacctctgtgtctggctac
atctaccacaagctgctgggtcatgaggtggaagatgttatcatcaaatgccagctgcct
aaacgcttcactgcgcagggcctgccagacctcaaccactcacaggtttatgctgtgaaa
acggtactgcagcgacccctcagtctgatccaggggcctccaggaaccggcaagactgtc
acctctgccaccattgtctaccatctggccagacagggcaatggtccagtgctggtttgt
gctccaagtaacatcgcagtggaccagctaactgaaaagatccatcagacggggctgaag
gtggttcgtctgtgtgctaagagtcgtgaggccatagattcacctgtgtctttcctggct
ctccacaatcagatccgcaacatggacagcatgccagagttacagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgatgagaaacgttaccgagctctcaaacga
actgcagagagagagctgctcatgaatgcagacgtgatctgttgcacatgtgtgggtgcg
ggtgaccctcgcctggcaaaaatgcagttccgctccattctcatcgatgaaagcacccag
gctacggagcccgagtgcatggtgccggtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagttgggtcctgtggtcatgtgcaagaaggcggctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggcgctcagcgctttcccttcaaacatcttctacgagggttcc
ctgcagaacggggtcactgctgctgatcgcatcaagaaaggcttcgacttccagtggcct
cagccggataagcccatgtttttctatgtgacccagggccaggaggagatcgcaagctct
ggcacctcctatctcaacaggactgaggctgctaatgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacctgaccagattggcatcatcacgccgtacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactctaccaggag
gtggagatcgccagtgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaatgagcaccagggcatcggcttcctgaacgacccacgtcgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaatcctaaggctctgtcc
aagcagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggag
ggtccgctcaacaacctgagagaaagtctcatgcagttcagcaaaccgcgcaagctggtt
aacacaatcaaccctggagctcgtttcatgagtactgccatgtatgatgcgagagaggcc
atgattcctggatctgtgtatgaccgcagcaacactggacgtccatctaatatgtacttc
cagacacatgatcaggttggcatgatcgggactgggccgaacccgatgggctccatgaac
attcccatcccattcaatctggtcatgccgcccatgcctccgcctgggtacctgggccag
gtgaacggacctgctgctggtcgcggtgctcctaaaggtaagaccgggggtcgtggaggt
cgtcagaggaaccgtggcacgggtaaccacggcagcgggcaggccaacatgccgagcagc
caggccagtcaggatctggtgtcccagcccttctctcagggtcctctgacccagggctac
atcaccatgagccagccttcacagatgagccagcccggactgtcccagcctgagctctca
caggacagctacctgggtgacgagttcaaatcccagatggatgtggcgctctcccaggat
tccacctaccagggcgaaagggcatatcagcacggaggagtgactggactctcacagtac
tag
DBGET
integrated database retrieval system
