Chryseobacterium sp. IHB B 17019: ATE47_01435
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Entry
ATE47_01435 CDS
T04193
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cih
Chryseobacterium sp. IHB B 17019
Pathway
cih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ATE47_01435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cih03400
]
ATE47_01435
Enzymes [BR:
cih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ATE47_01435
DNA repair and recombination proteins [BR:
cih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ATE47_01435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALR29274
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All DBs
Position
314108..316810
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AA seq
900 aa
AA seq
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MGLSKYREKRSQEKTPEPFGGEPSGKELRFVVQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSLDPEIKRLAMMVEDHPYDYRDFEGIIPKGQYGGGTVIVWDEGTYEPAEPVDGDLKKQE
KHLLHQLYSGKIKILMKGKKLKGEFALVKAHGRGENGWLLMKLDDKYASKDDVTLKDKSV
ISRKTIEQMEKAPDNVYGRNIMKKNTTVKDKKATARKAVEVIDSQLAAEPETQVAKQPKL
TNLLKGTTKEKFYDSVQPMLATLVDEPFDSNDWLYEIKWDGYRAVAFMEGKKIELKSRND
KSFAEKFYPIYDELTNLKLDAVLDGEIVVLGEHGKANFGSLQNWRSEADGDLVYYVFDIL
WYKGMDLKGLTLVERKAILAQVLPESKTILLSKEFDTSGLEFLEAATKMGLEGIMAKRKG
SIYHTHNRTKDWLKIKANKRQEVVIGGFTRNDDTNKQFSSLLVGVYEGKKLIYTGKVGTG
FNDKMQKEMMEQFKPLFTDKPPFSEEPDVNKPSRFRPNPPHATVTWLKPELIGEVSYTEL
TSDGVMRHPSFKGMRSDKSAKKVVLERERNTEDVLSDEKDTIVNPRGKQGRKTLLNPTEK
TQVKKINRHELKFTNLDKIFWPDEKITKRDLINYYYQIAPYILPYLKDRPQSMNRFPDGI
KGGGFYFKDVTGKAPDWIERYSYTSDSDHRERQYLVGSDEATLLYMANLACIEMNPWNST
IKKTDHPTYCIIDLDPDKNSFDQVIETALVAKQILDDMGVPSYCKTSGSTGLHIYIPLGN
KYTYEQSKEFARVIVTLIHRELPKFTTIERAISDRKGKMYLDFLQNRPHATIASVYSLRP
KPGATVSMPLQWDEVKQGLKMKDFNIFNAMERLESLGDIFKPVLGKGINMEKIISDASNG
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggcttatctaaatatcgtgagaaacgatcacaagaaaagacgcctgaaccttttgga
ggcgaaccctcaggaaaagagttacgatttgtagtacaaaagcacgacgcctcgcacctg
cattacgatttcaggcttgagatggatggagtgctgaaaagctgggcagtccccaaggga
ccatcgttagatcctgagatcaaacggctggctatgatggttgaagaccatccctatgat
tacagggattttgagggaattattcctaaagggcaatatggtggtggtacagttatcgta
tgggatgaaggaacctacgaacccgcggagcccgtggatggcgatttgaaaaaacaggag
aaacacctgttgcatcagttgtattcgggtaagataaagatactgatgaaaggtaaaaag
ctcaaaggcgagtttgccctggttaaggcacatgggcggggagagaatggatggctgtta
atgaaactcgatgataaatatgccagtaaagatgatgtcaccctaaaagataaatctgta
atatccagaaaaaccattgaacagatggaaaaagcacccgacaatgtttatggccgtaat
atcatgaaaaaaaataccactgttaaggataaaaaggcaactgccagaaaagctgttgag
gtaattgattcacaactggcagcggagccggaaactcaagtagcgaaacagccaaaatta
acaaaccttctgaaaggaacaaccaaggagaaattttatgacagtgtgcagcctatgttg
gcaacgcttgttgatgagccatttgacagtaatgattggctttatgaaataaaatgggat
ggatatcgtgcagttgcctttatggaagggaaaaaaatagaactgaaatcccgcaacgat
aaaagttttgccgaaaaattttaccctatatatgatgagctgacaaacctgaaactggac
gctgtactcgacggggaaattgttgttcttggggaacatggcaaagcaaacttcggctcg
cttcagaactggcgtagtgaagcagatggcgatctggtgtactatgttttcgatattttg
tggtataagggaatggatctgaaaggacttactttggtagagagaaaagccattctcgca
caggtgctgccggaaagcaagactattctcctcagcaaggaatttgatacctctgggtta
gaatttttagaagcggcaacaaagatgggccttgagggtattatggcgaaacgtaaaggc
agtatatatcacactcacaatcgcaccaaagactggctcaaaattaaggcgaataaacgg
caggaggttgttattggcggttttacccgtaatgatgacaccaataaacagttcagcagt
ctacttgtcggggtctacgaaggtaaaaagttgatttacacaggaaaagtgggaacgggt
ttcaacgataagatgcagaaagaaatgatggaacagttcaaaccgctgttcacggataaa
ccacctttttccgaagagcctgatgtaaataaaccatcgcgcttccgtcccaatccaccg
catgcgactgtaacttggcttaaaccggaactgatcggtgaggtgagctacacggaactc
accagcgacggggtcatgcggcatccttcattcaaaggcatgcggtcagataaaagtgca
aaaaaggtagtgcttgaacgagaaaggaacacagaagacgttttatcggatgaaaaagat
accattgtgaatccgcgaggtaagcaagggaggaaaacgcttttaaatccaacagaaaaa
acgcaggtaaaaaaaataaacaggcacgaactgaaatttaccaacctcgataaaattttc
tggccggatgaaaaaattacaaagcgggacctgatcaattattattatcagattgcaccg
tatattttaccttacctgaaagaccgcccgcagagcatgaaccggtttcctgacggtatt
aaaggcggggggttctacttcaaggatgtgaccggaaaggcaccagactggattgaaaga
tatagttacaccagcgattctgatcatcgcgaaaggcagtatcttgtgggaagtgatgaa
gctacgttactttatatggctaacctcgcctgtattgagatgaatccgtggaatagcaca
attaaaaaaaccgatcatccgacctactgtattattgatcttgatccagataaaaattct
tttgaccaggtaattgaaacagcactagttgccaagcagattcttgatgatatgggtgtg
ccgagttactgtaagaccagcggatcaacggggcttcacatttatataccgcttggcaat
aaatacacctatgagcaaagcaaggaatttgcaagggtgatcgtgacgctaatacatcgc
gaacttccgaagtttacaacaatcgaaagggctatttctgaccgcaaaggaaagatgtac
cttgatttccttcagaaccgcccacatgcgaccattgcctcagtatactcattaagacca
aagcctggagcaactgtttcaatgcctttgcaatgggacgaggtaaaacaaggcttaaaa
atgaaagattttaatattttcaatgcgatggaaaggcttgaaagtttgggcgatattttt
aagcctgttctgggaaaagggattaacatggaaaagattatatcggatgcatcaaatggt
taa
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