Chryseobacterium sp. IHB B 17019: ATE47_15685
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Entry
ATE47_15685 CDS
T04193
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cih
Chryseobacterium sp. IHB B 17019
Pathway
cih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATE47_15685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cih03400
]
ATE47_15685
Enzymes [BR:
cih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATE47_15685
DNA repair and recombination proteins [BR:
cih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ATE47_15685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
SBP_bac_3
ATP-synt_ab
Motif
Other DBs
NCBI-ProteinID:
ALR31865
LinkDB
All DBs
Position
complement(3392803..3396171)
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKNINEKFLPDLLQKEFGKEIFIQLENNQHIAVKGSAGSSVSIFIAELFLTQKKHILY
LVDDKEDALYANTEIEDLLGKDKVLYFPATHLEPYQVEKTQNANLVLRTEAINKITSGKS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYNFQQTDFVSEPGEF
SVRGGIVDVFSFSNEKPYRITFFGNEVESIKTFDIETQLSIDKVKDFQLVSNMNFAVTGT
RVSLLQLLPKESFVISKNGIVGMQKLKSFYEKSLEKFETLSKDIAHRTPQELFISDQEFL
FDYKKFKTVDFGSVPIEGLIDLSEIKIEQTAQPSFHKNFELLIEDLEGKQNEGFDTWISF
STEKQKERLESIFEELEHQLPFKSFRSELHEGFVDFDHKLLVYTDHQIFDRYQRYKAKNM
FAKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPEGREIVLSKLGSPSWKSLKQKTKAKVKQIAFDLIQLYAQRKTAKGFA
YTPDSYLQNELEASFLYEDTPDQEKATIDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVSYVNRFRTAKQKSETLEALKNG
KVDIIIGTHQLASASVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFNEEIIRDAVSYEIQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVIIGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
VFINDAHKFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDQEFENLFENEEER
NKLFKTTKDVNIDTDLELMLPDWYISNTEERLLLYQKLAEIENEENLLKFESELIDRFGS
LPDEAKNLLKSVSLKWLASDIGFEKIVMKNGVFLGYFPGNPQDKFYQTNKFKHIINYLTR
NPSEAQLKEKVSKDGNHLMMRKDKVINVDEVNYLLKSILKED
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaaaacatcaatgaaaaatttctgcctgatttgcttcagaaagaattcggc
aaggaaatttttattcaattggaaaacaatcaacatattgctgtaaaaggaagtgcagga
tcttcagtttctatttttatagctgaacttttccttacccaaaaaaagcatatcctttat
ttggtggatgataaagaagatgctttatatgccaatacggaaatagaagatttgctggga
aaagacaaggttttgtactttccggcgactcatcttgagccgtatcaggtcgagaaaacg
caaaatgccaatctggttcttagaacagaagcgatcaacaagattacttcaggcaaatct
ccaaaagtaatcgttgcttatgcaggagctttgtcagaaaaagttttaaagaaagaagat
tttaaggcaatttctcaccatatcaaagtgggcgaccagcttgactttgattttgtagac
gaattactgaatcattataatttccagcaaacagattttgtttccgagccgggagagttt
tccgtaagaggtgggattgttgatgttttctccttttctaatgaaaaaccataccgtatc
acattttttggaaatgaagttgagagcattaaaacttttgatatcgaaacccagctttct
attgataaagtaaaggattttcagttggtttccaatatgaattttgcggtgacgggaacc
cgggtttcattgcttcagctgttgccgaaggaaagttttgtgatttctaaaaacgggatt
gtcggaatgcagaagttgaaatcattttacgaaaaatcactggaaaagtttgaaacgtta
agcaaagatattgcacacagaacaccacaggaattatttatttccgatcaggaattttta
tttgattataaaaaatttaaaacagttgatttcggaagtgtcccgattgaaggattaata
gacttgtccgagataaaaatcgaacaaaccgcgcagccttcatttcacaaaaactttgaa
ttattaattgaagatctcgaaggcaaacaaaacgaaggtttcgatacctggatttctttc
tcaacagaaaaacagaaggaaagactggaatccatctttgaagagcttgaacatcagctt
ccttttaaaagtttcagatcagagcttcatgaagggtttgtagattttgatcataaattg
ttagtttatacggatcaccagattttcgaccgttatcaaagatataaagcaaaaaatatg
tttgcaaaatctgagcagcttaccctgaaagatctgatgtccctgaaagtgggagattat
attgctcacattgaccacggaatcgggaaattcatgggattggtaaaggtgaataatgat
ggcaaaattcaggaatgttttaagctgacgtataaaaacggtgaccttttatatgtaagt
attcattcccttcacaaaatctctaaatataatggcccggaaggcagggaaattgttctg
agcaagctgggatcaccttcctggaaatctttaaaacaaaaaacaaaggcgaaagtaaaa
caaattgcttttgacttaatacaattatacgctcaaagaaagacagcgaaagggtttgct
tatactccggattcttatttacaaaatgaattggaagcaagtttcctttatgaagataca
ccggatcaggaaaaagcaaccatcgatgtaaaaaaagacatggaagcagatacggtaatg
gatcgtctggtttgcggtgacgtaggattcggtaaaacggaagttgcgattcgggcggct
ttcaaggcggcaactgatggaaagcaggttgcggtattggttcctacaacgattctggcg
ttccagcattacagaagctttaaagaaagattaaaagattttccggtaaatgtttcttat
gtcaaccgcttcagaacggcaaagcaaaaatctgaaacgctggaagcccttaaaaacgga
aaagtagacattataataggaacgcatcaattggcaagcgcttccgttaagtttaaagac
ctggggttattaattattgatgaagagcataaattcggggtttctgtaaaggataaatta
aaaaccctaaaaagcaatgtcgatactttgaccttaacggctacaccaattccaagaact
ttgcagttttcccttatggctgcgagagatttatcggtaataaaaacgccgccgccaaac
agacagcctgttgatacgcaattaattggttttaatgaagaaataatccgtgatgcggtt
tcttatgaaattcagcgtgacggtcaggtttactttattaataacaggattgaaaacctt
aaagatattgcaggattaatccagaggttggttccggatgccagagtgatcataggtcat
gggcagatggaaggaaagcagcttgagaaaaacgtccttgattttatggaaggaaaatat
gatgttttggtttctacaacaatcgttgaaagtggagtagatgtcccgaatgccaataca
gttttcattaacgatgcgcacaaattcgggatggcggatcttcaccagatgagaggaaga
gtggggcgaagcaacagaaaggctttctgttatctgattacgccgccttatgatatgatg
acttccgatgcaagaaaacgtctggaagcgattgagcagttttcagatttgggaagtggt
ttccagattgcgatgaaagacctggaaatccgtggtgcgggagatttgctgggtgcggaa
cagagcggatttattaatgagatggggtttgaaacttatcaaaaactgatgcaggaagct
ttagaagaattgaaagatgaccaggaatttgaaaatctttttgaaaatgaagaggaaagg
aataaattatttaaaactactaaagatgtcaatatagatacggatctggagctgatgctt
ccggattggtacatctcaaatacggaagaaagattattgctttatcaaaaacttgctgag
attgaaaacgaagaaaatttgttaaaatttgaatctgagttaatagaccggttcggaagt
ttaccagatgaagcaaaaaatttattaaaaagtgtaagcttaaaatggctggcttctgat
atcggcttcgaaaaaattgtaatgaaaaacggggtgtttttaggatactttccgggcaat
ccacaagacaagttttaccagacaaacaagtttaaacacattatcaactacttgacacgg
aatccatctgaagcccaactgaaggagaaagtaagcaaggatggaaatcaccttatgatg
agaaaagacaaggtaataaatgtcgatgaggtgaattatctgctaaaatcgatcttaaaa
gaagattaa
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