Carya illinoinensis (pecan): 122276230
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Entry
122276230 CDS
T08745
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03022
Basal transcription factors
cill03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122276230
09124 Replication and repair
03420 Nucleotide excision repair
122276230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122276230
03400 DNA repair and recombination proteins [BR:
cill03400
]
122276230
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122276230
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122276230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
122276230
NCBI-ProteinID:
XP_042941730
LinkDB
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Position
9:complement(6077705..6090423)
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AA seq
451 aa
AA seq
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MPQVKIIAKNFMDMVSSLPAMKLDKLYENAFICEAILRSLPPLAKKYVLQALYIDVPITA
KSMEEWVLPDGSSKHRVAIDRLIQLRIFTETVDRKRETTYRIHPTFQTNLQKLVTLGEVL
PREPMPSDITVRLPSLEDLEVYALAQWESFLLQLINSAQAERPLNISPSMMKVFQRGLLS
QREKEAPRLTESGFQFLLMDMNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGK
AYNSNTLTDIQRSLIKDLTDLGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGFVV
VETNFRLYAYSTSKLHSEVLRLFSRIEYQLPNLIVGAITKESLYNAFENGIAAEQIITFL
QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMSPAHYYDEFPSRDVFEAACDYAREW
NGLLWEDSKSMRIVVKAEIHSHMREHLRRQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaagataatagcgaagaatttcatggacatggtgtcctccttgcccgcc
atgaagctggataaactatacgagaatgcattcatctgcgaagctattctcaggtcactg
ccacctctggccaagaagtatgttttgcaagcgttgtacattgatgttccaataacagcc
aagtcaatggaggaatgggtgcttccagatgggtcctcaaagcatagagttgcaattgat
agattgattcaattaaggatattcactgagactgttgacaggaaaagggaaacaacttac
agaattcatccaacatttcagacaaacctccaaaagcttgtaacacttggtgaggttttg
ccaagggaaccgatgccttctgacataacagtgaggctcccaagcttggaggatcttgag
gtttatgcccttgcacaatgggagtcttttttgctccaacttataaactctgctcaagct
gaaaggccattaaatattagcccttctatgatgaaagttttccagcgaggccttttgagt
caaagggagaaggaagctccaagattaactgaaagtggttttcaattcttgctgatggac
atgaacgcacaactttggtacatcatcagagagtacatctctaattctgaggagcgaggt
gtggatccagctgatttgatttcattcttactagagcttagttttcatgtcactggcaag
gcatataatagtaacacgttgactgatattcagaggagtttgattaaggacctcacagat
ttgggattggtcaaactccaacagggcaggaaagagagttggtttatacctactaaatta
gctaccaatctttcagtaagcttgacagattcatcgtcacggaaacaagggtttgtggtt
gtggaaacaaattttagattgtatgcatactccacttcaaagttgcactctgaagttcta
cgtcttttctcaaggatagagtatcaacttcctaatcttatagtcggagcaatcacaaaa
gaaagtttatataatgcctttgaaaatggtattgcagcagagcagataattacctttctt
cagcagaatgcccatcctcgtgtagcagagagaataccatctgtacctgaaaatgtcacg
gatcagattaggctgtgggaatcggatcttaatagagttgagatgagtcctgcacattac
tacgatgaatttccctctagggatgtcttcgaggctgcttgtgattacgcacgagagtgg
aatgggttgctatgggaggattcaaaaagcatgcgtatagtagtcaaagcagaaatacac
agccatatgcgtgaacatttacgccgtcaaaagtag
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