Carya illinoinensis (pecan): 122292702
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Entry
122292702 CDS
T08745
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03022
Basal transcription factors
cill03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122292702
09124 Replication and repair
03420 Nucleotide excision repair
122292702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122292702
03400 DNA repair and recombination proteins [BR:
cill03400
]
122292702
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122292702
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122292702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
Tfb4
Motif
Other DBs
NCBI-GeneID:
122292702
NCBI-ProteinID:
XP_042957113
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Position
13:complement(13541677..13545639)
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AA seq
420 aa
AA seq
DB search
MNNGDGKRWNGGGEEDEDEDEGSGGGPDGWQITYADERSWESLQEDESGLLRPIDNKILY
HAQYRRRIRSLSSQATAARIQKGLIRYLFVIIDLSRAASETDFRPSRMVVVAKLVEAFIR
EFFDQNPLSQLGLVSVKDGVAQCLTELGGSPESHVKALMGKLECSGESSLQNALDLVHGY
LKQIPSYGHREVLVLYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAELFICKHLCQET
GGLYSVALDEPHLKELILEHAPPPPAIAEFAISNLLKMGFPQRAAESSIAICSCHKEAKV
GGGYTCPRCKARVCELPTECRVCGLTLISSPHLARSYHHLFPVVPFDEVPLSFLNDANRL
PRSCFGCQQSLLNPGNKPGLRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKSAIE
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatggcgatggaaaacgatggaatggagggggagaggaagatgaggatgaggat
gagggaagtgggggaggccctgatgggtggcagataacttacgcagatgagaggtcatgg
gaatctctgcaagaggatgagtccggacttcttcgccccattgataacaagatactttac
catgctcagtatcgccggcgcattcgctccctatcctcccaggcaactgcagctcgtatc
cagaagggcctcattcgctatctatttgttattattgatctctcaagggcagcctcagag
acggattttcggccaagccgaatggtcgtggttgcaaaactcgttgaagcttttattaga
gagttctttgaccaaaatccacttagtcagcttggcctggtgagtgtaaaagatggggtt
gctcagtgcttaacagagcttggtggcagtcccgaatcccatgtgaaagctttgatgggt
aaactggagtgctctggtgagtcctccctacagaatgccctggaccttgttcatggctat
ttaaaacagattccatcatatggtcatcgagaagttctcgtcttatactctgctctcagt
acttgtgatccgggtgatataatggagactatccaaaagtgcaagaagtcaaaaattagg
tgttcagttattggtctctctgcagaactatttatatgtaaacatctgtgccaagaaact
gggggcttgtactctgttgcattggatgagccccacttgaaagagttaatactggaacat
gctcccccacctccagcaatagcagagtttgccatttctaatttgttaaagatgggtttc
ccacagagagcagcagagagttctatagcaatatgttcatgtcacaaggaggctaaggtt
ggagggggttacacttgtccaagatgcaaagcgcgtgtatgcgagttacctactgaatgt
cgagtatgtgggttgacacttatttcttcaccccatttggcaagatcatatcatcatctc
tttccagtagtaccattcgatgaggtgcctctatcatttctgaatgatgctaacagatta
ccaagatcttgctttggctgccaacaaagtcttctaaatcctggaaacaaacctggcctt
cgtgtttcatgcccaaagtgcaaacagcacttctgccttgattgtgacatttacattcat
gagagcttgcataattgccctggttgtgagagcttcaggcattccaagtcagccattgag
tga
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