Carya illinoinensis (pecan): 122309967
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Entry
122309967 CDS
T08745
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122309967
03015 mRNA surveillance pathway
122309967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122309967
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122309967
mRNA cycle factors
P-body specific factors
122309967
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF536
Motif
Other DBs
NCBI-GeneID:
122309967
NCBI-ProteinID:
XP_042979733
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Position
5:726124..735265
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AA seq
529 aa
AA seq
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MFSVGFEMKGSSDRTKVVLRHLPPAISQETLMDQIDAAFADRYRWATFRPGKPGTQHQSY
SRAYIDFKKPEDVIEFADFFDGHLFVNEKGIQFKTIVEYAPSQRVPKQWSKKDGREGTIL
KDTEYLQFLEFLAKPVENLPSAEIQLERREAERGGAVKDAPVVTPLMDFVRQKRAAKGGS
RRSLSNGKMSRRAARSSAGSPSSSSSKRGSARIRMSSTMYVLRDAAKNMSVKDKSTYILV
PKRDDEQLSDKAVTLVPAAGTEVLAEESGISGTNESGKKKLLLKGKEREISHLSGSLSQQ
QGLTSSAGNAIGSAALKQNQQRQGGGRIVRKILLNKDSRQSQSFLGLSEQQIQTSNLEKD
KRPPRPPHVQLVSKDTIPTPDDKVLGNDLHGFFNERQEKRSRNKDKPDRGIWTSLRRSDG
SNVNDESLSSSASQLTLSLADYSEGSHGDMMIDMPNARSGGVKSLVTGRTNHSSLENGSH
KHFGRRGPAHGVKDVDGSSTMSEGKHSRKGTGYNSHEKQVWIQKQSSGS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagtcgggtttgaaatgaagggctcgtcggatcggacaaaggtggtgctgcgg
cacttgccgccggccatctctcaggaaactctaatggaccaaatcgacgccgccttcgct
gatcgctaccgctgggccactttccgtccggggaaaccaggcacgcaacatcaatcctat
tctagagcatacattgacttcaagaaacctgaggatgttattgagtttgctgatttcttt
gatgggcacttgtttgttaacgagaagggcattcaatttaaaactattgttgagtatgct
ccttctcaacgtgttccaaaacagtggtctaaaaaagatggacgtgaaggaacaatatta
aaagataccgagtatctgcagtttcttgaatttcttgcaaagcctgtcgaaaatcttccc
agtgcagagatacagttagagagaagagaagcagaacgtggtggtgctgtaaaagatgct
cctgtggttacaccattaatggactttgttcggcagaaaagagctgctaagggtggttct
cggcgatcgttgtctaatgggaaaatgagcagaagagctgctagatcatcggcaggtagt
cctagttcatcctcatcgaaacgaggttctgcaaggataaggatgtcctccacaatgtat
gttttgagggatgctgcaaagaacatgagtgtcaaagacaagtcaacatacattttggtt
ccaaagcgagatgatgagcagctttctgataaggctgttactttggttcctgcagctgga
actgaagtattggcggaggaaagtggaatttctgggactaatgaatctgggaaaaagaaa
ctccttctgaaagggaaagagagagagatttcacatttgtcaggcagcttgtcacagcag
caaggtttaacatcttcagctgggaatgcaatcggttcagctgctctcaagcagaaccag
caacgccaaggtggtggtaggatagtcagaaaaatacttttaaacaaggattcacgtcaa
agtcagtcttttttgggcttgtctgagcagcaaatccagacttcaaatctagaaaaagac
aagcgacctcctcgtcccccacatgtgcaattggtttcgaaggatacaattccaactccc
gatgataaggttcttggtaatgacttgcatgggttttttaatgagaggcaggaaaaacgt
tcaagaaataaggataagcctgatcgcggcatttggacttctcttcgtcgttcagatgga
tctaatgtcaatgatgaatctttgtcatcctctgcctctcaacttacactgtcactggca
gattattctgaaggatctcatggagatatgatgattgacatgccaaatgctagaagtggg
ggagttaaaagccttgtaactggacgcactaatcattcttctttagaaaatggttctcat
aaacattttggtcgccgcgggccagcacatggtgttaaggatgttgatggctcatcaact
atgagtgaggggaagcattcgagaaaaggcactggctataattcccatgagaaacaagtt
tggatacaaaaacaaagttctggttcgtaa
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