Carya illinoinensis (pecan): 122313296
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Entry
122313296 CDS
T08745
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122313296
09122 Translation
03013 Nucleocytoplasmic transport
122313296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122313296
03041 Spliceosome [BR:
cill03041
]
122313296
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122313296
Spliceosome [BR:
cill03041
]
Complex C
Other components
EJC/TREX
122313296
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122313296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
122313296
NCBI-ProteinID:
XP_042984098
LinkDB
All DBs
Position
6:complement(12698777..12725739)
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AA seq
607 aa
AA seq
DB search
MEVFKRAILQPGPPESFALQTVQEVVKPQKQTKLAQDENQLLENILRTLLQELVSSAVQS
GEQIMQYGQLIDDGETQGHIPRLLDIVLYLCEREHVEGGMIFQLLEDLTEMSTMRNCKDI
FGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSER
SAVNIKGVFNSSNETKYEKDPPDGISIDFNFYKTFWSLQEYFCNPASLTPAPAKWQKFTS
GLMIVLNTFESQPLSDEEGDANNLEEEAANFSIKYLTSTKLMGLELKDSSFRRHILVQCL
VLFDYLRAPGKNEKDLPSESMKEEIKSCEERVKKLLEMTPPKGKDFLSKTEHILDREKNW
VWWKRDGCPAFEKQPLEKKTVQDVAKKRRPRWRLGNKELSQLWKWADQNPDALTDSQRVR
TPSIMEYWKPLAEDMDVSAGIDAEYHHKNNRVYCWKGLRFSARQDLDGFSRFTDHGIEGV
VPLELLPPDVRSKYQAKPNDKSKRAKKEETKGAAPQVEDNQIATPASEVDGEGTRADLEA
SAAQMDIDATATGNISQGGTPTPDEHQKQSSDTDVVQEAGQLEADAEVETGMIDGETDAE
VDLDAVG
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgttcaagagggccatcctacagcctgggccacctgaaagttttgcactacaa
acagttcaggaagttgtaaaacctcaaaaacaaacaaaactagcccaggatgagaatcaa
ttgttggaaaatatccttcggactctgcttcaggaactggtgtcatctgcggtacaatca
ggggagcaaataatgcagtatggccaattgattgatgatggggaaactcagggtcatatt
cctcgtcttcttgacattgttctgtatctttgtgagagagaacatgttgaaggtggcatg
atatttcaactgttggaagacttgacagaaatgtctacaatgagaaactgtaaagatatt
tttggttacatagagagtaagcaagatattttagggaagcaagagctttttgctcgcggg
aaacttgtgatgttgagaacgtgcaatcaacttcttcgtcgtctatcaaaggcgaatgat
gtggtgttctgtgggcgaattctcatgtttttggcacatttttttccattgtctgaacgc
tcagctgtgaatataaaaggagtttttaactcatcaaatgaaacaaagtatgagaaagac
cctcctgatggaatatctattgatttcaacttttataagacattttggagtttacaggaa
tatttttgcaaccctgcttctttaactcctgctcctgcaaagtggcagaaattcacatcc
ggtttaatgattgtcttgaatacattcgaatctcaaccattaagtgatgaagagggagat
gctaataacttggaggaagaagcagcaaatttcagcattaaatatcttacaagcactaaa
ctgatgggtttagaattgaaggattcaagctttcgacgccatattctggtgcagtgcctc
gtattgtttgattatctgagggctccaggaaagaacgagaaagatttgccatctgaaagc
atgaaagaagaaataaaatcatgtgaggagcgtgtgaaaaagctgcttgaaatgactcca
cctaaagggaaggattttctcagtaaaactgaacacatattagaccgagagaagaattgg
gtgtggtggaaacgtgatggttgtccggcatttgaaaagcaaccactagagaagaaaaca
gtgcaagatgtagctaaaaagcgtagaccaaggtggagactaggaaataaagaactttct
cagctgtggaagtgggcagatcagaatccggatgcattgactgattctcaacgtgtccga
acaccttccatcatggagtactggaaacccttggctgaagacatggatgtatcagctgga
atagacgctgaatatcaccacaaaaataatcgggtttattgttggaaaggtcttcgattt
tcagctagacaggacttggatggattttctagatttacagaccatgggattgaaggtgtt
gttcctttagaacttttgccacctgacgttcggtcaaaataccaagcaaagccaaacgac
aagtctaagcgtgctaagaaggaagaaacaaagggtgctgcaccacaagttgaggacaat
cagattgctactcctgcaagtgaagttgatggtgagggaaccagagctgatcttgaagcc
tcggcagcacagatggatattgatgccacggcaactggaaatatatcccaaggtggcact
ccaacaccagatgaacatcagaagcaaagttccgacactgatgttgttcaagaggcaggt
cagttagaagctgatgctgaggttgagacgggaatgatagatggagagactgatgccgag
gttgatttagatgctgttggctga
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