Carya illinoinensis (pecan): 122317994
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Entry
122317994 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122317994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122317994
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122317994
Spliceosome [BR:
cill03041
]
Complex A
U2 snRNP components
U2 related factors
122317994
Complex B
122317994
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122317994
NCBI-ProteinID:
XP_042991038
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All DBs
Position
8:9220883..9226329
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AA seq
1155 aa
AA seq
DB search
MDEGKRKSRREDSERSEEDLKRSHRDRDKERDKERNGDKHKEKRNRDSRRAERERSSDSD
GKYDREREREKHRTRSRDDEKERAREKKREKEREDREREREKEREKEREKEKRERAREKE
KEREREREREKRERDREERERERGREKERERREREREREKERRMRDREKRRAADSDDSND
EDEYRERDRKRHRRDDGDHRERDRERSSSRPRKHRDDSEEISRRKSGDDDSEKIEKKATR
EEELEDEQKRLDEEMEKRRRRVQEWQELRRVKEEAEREKRGEADADEPMSGKTWTLEGES
DDEEAPGKLETDMDVDEDAKPTTEQAGDSVLVDSHDGNVTSTSQEVVDVSAEDDEIDPLD
AFMNSMVLPEVEKLKDSLAPSNANDKNDELNNKDKKHAASNGQQPRKTSNKSMGRIMQGE
DSESDYGDPDNDEDTLDDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKET
SKMTSEDVAAYRKQLELKIHGKDVPKPVKTWHQTGLTGKILETIKKLDYEKPMPIQAQAL
PIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHS
DIKKFTKVLGIGCVPVYGGSGVAQQISDLKRGTEIVVCTPGRMIDILCTSGGKITNLRRV
TYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEVLARKVLNKPVEIQV
GGRSVVNKDITQLVEVRPENERFFRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHG
YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDY
VHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQAVPDDLKALSDSFMAKVNQG
LEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKTDSEDEDEGIRKAGGDISQ
QAALAQIIAAASKVSTPSMPTPVSAAQLLPNGGLPVTLPGVMGLTIPGTTAVVTGTGLPV
VANDAAGAARAAAIAAALNLQQNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLG
PISEWTGAAITTRGQYFPSGKVAGPGERKLYLFIEGPTEQSVKRAKSELKRVLEDITNQA
LQLPGGAQPGRYQVL
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggggaaacgtaagtctaggagggaggactcggagaggagcgaggaggatttg
aagcggagccaccgggaccgggataaagaaagagataaggagaggaacggggataagcac
aaggagaagaggaaccgtgatagtcggcgagccgagagagaaaggagtagtgattctgat
ggaaagtatgatagggagagggagagggagaagcatagaacgcggagtcgggatgatgag
aaggaaagagcgagagagaagaagagggaaaaagagagggaagatagagagagggagagg
gagaaagagagagagaaagagagagagaaagagaagagggagagggcgagggagaaagaa
aaggagagggaaagggaaagggaacgagagaagagagaacgtgatagagaggagagggag
agggagaggggaagagagaaggaaagggaaaggagggagcgtgaaagagagagagagaag
gagaggagaatgcgtgatagggagaagcggcgagcagctgatagtgatgacagcaatgac
gaggatgagtacagggagcgtgataggaagcggcataggagagatgacggtgatcacagg
gagagagatcgtgaacggagtagcagtaggcctcgcaaacacagggatgacagtgaagag
atctcaaggagaaagagcggtgatgatgattcggagaagatagagaagaaagcgactcgt
gaggaggagttagaggacgagcagaagagattggatgaggaaatggagaagcgaaggagg
agagtacaggagtggcaagagttgaggagagtgaaggaagaagctgagagagaaaaacgt
ggggaagcggatgctgatgaacctatgtctggcaagacctggactcttgaaggggaatct
gacgatgaagaagcaccgggaaaattggagactgacatggatgttgatgaagatgccaag
cctacaaccgaacaagctggtgattcagtgttggttgattctcacgatggaaacgtgaca
tccacttcacaggaggtggttgatgtttctgcggaggatgatgaaatcgatccattggat
gccttcatgaattctatggtgttgcctgaggttgagaagctaaaagatagtttggctcct
tcaaatgctaatgataagaatgatgagttgaataacaaagataagaagcatgcagcaagt
aacggtcaacagccacggaagacttcaaataaatctatgggtcgaataatgcagggcgaa
gattccgagtcagattatggtgaccctgataatgatgaggatactttggatgatgaagac
gatgatgagttcatgaaaagggtgaagaagacgaaagcggagaagctttcaatagttgac
cactcgaagattgattatcaaccattccggaaaaatttctacattgaagtgaaagagaca
tcaaagatgacttctgaagacgttgctgcttaccggaaacaattggaattgaagatacac
ggtaaggatgtgccaaagccggtcaaaacatggcaccaaactggacttacaggtaaaatc
ttggagacgataaagaagcttgactatgaaaagccaatgccaattcaagctcaggctctg
cctataattatgagtggtcgagactgcattggcattgccaaaactggctcgggcaaaacc
cttgcgtttgtgctgccaatgttgaggcatatcaaggaccagccgccggtggtagctgga
gatggacctattgggctaataatggcccctacaagggagcttgtacagcagatccacagt
gatataaagaagtttacaaaagtgctaggcatcgggtgtgtgcctgtatatggaggttct
ggtgttgcccaacaaattagtgatttaaaacggggcaccgaaattgttgtatgtactcca
ggtaggatgattgacatactttgcaccagtggggggaaaatcacaaatctgcgtagagtc
acttatttggtcatggatgaagctgatcgaatgtttgacatgggttttgaaccccaaatt
actcgaattgtgcaaaatattcggccagatcgccaaacagtactcttctctgccacattc
ccccgccaagttgaagttttggcgcggaaagtgttaaacaagcctgtagagatacaagtc
ggtggtagaagtgttgtgaacaaggacataacgcagttggttgaggtgaggcctgaaaat
gagaggttctttagattgttggaattacttggtgaatggtatgagaagggaaaaattttg
atttttgtccactcacaagagaagtgtgatgctttgttcaaggatctcctcaggcatggt
tatccttgcctctcactgcatggggccaaggatcagacagatagagaatccaccatttct
gactttaaaagcaacgtttgcaatttgttgattgcaacaagtattgctgccagggggtta
gacgtgaaggagcttgaattggtgatcaactttgacgttccaaatcactatgaagactat
gtccaccgtgttggtcgtacaggtcgagctggtcggaaaggctgtgctatcacatttatc
tctgaggacgatgcaagatatgcaccggatcttgtaaaggcattggaactctctgagcaa
gctgttcccgatgacctgaaagctctttctgatagttttatggcaaaagtaaatcaggga
cttgagcaagcccatgggactggttatggtggaagtggttttaaattcaatgaagaggaa
gatgaagtgaggagagcagcaaagaaagcacaggccaaagaatatggttttgaggaggac
aagacagactcagaagatgaagatgaaggtataaggaaggcaggtggtgacatatcgcag
caggctgccttagctcagataatcgctgctgcctccaaagtcagtacaccttctatgcca
acgcctgtctctgctgcccaactgcttcccaatggtggactgcctgttacactgccaggc
gtaatgggtctaacaattcctggaacgacagcagttgtgactgggactggcctgcctgtt
gttgccaatgacgctgcgggggcagctcgagcagcagccattgctgctgctctcaacttg
cagcaaaatttggcaaaaattcaagctgatgctatgccggaacactatgaggcagaattg
gagataaacgattttccccagaatgcccgatggaaagttacccacaaggaaactttgggc
cctatttcggagtggactggagccgctattactaccagggggcagtatttcccgtcaggt
aaggtggcaggaccaggagaacgtaagctttacttgttcattgagggccctaccgaacag
tctgtgaagagagctaaatcagaattaaaacgcgttttggaagacatcactaaccaggcc
ttacaactacctggtggagctcaacctggcagataccaagttctgtaa
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