Carya illinoinensis (pecan): 122318476
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Entry
122318476 CDS
T08745
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122318476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122318476
Enzymes [BR:
cill01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122318476
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122318476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
122318476
NCBI-ProteinID:
XP_042991784
LinkDB
All DBs
Position
8:complement(3277541..3293047)
Genome browser
AA seq
1169 aa
AA seq
DB search
MTDRTGTNTKFSVLCSLFTWMQRSKSSAKKRSKFRKFLDAFCDPGNYFCPIRLILPNLDR
ERGTYGLKESVLATCLIDALGMSRDSHDALRLFNWRKGGARSGSNAGNFSLVAAEVLQRR
QGMASGGLTIQDVNDLLDRLASSENRAEKTSVLSTLINKTNAQEMKWIIMIILKDLKLGV
SEKSIFHEFHPDAEDLFNVTCDLKLVCERLRSRGQRHKRQDIEVGKAVRPQLAMRVADAT
AAWKKLNGKEVVAECKFDGDRIQIHKNGIEIHFFSRNFLDHSEYVHGMSDVIVQNILVDR
CILDGEMLVWDTSLNRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSL
KERHELLQKVVKPLKGRLEILVPNVGLGLNILRPSGEPCWSLIAHNVDDVERFFKETIEN
RDEGIVLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRHGGEVAQFLV
GLAERPAPNTYPRRFISFCRVGTGLSDEELDAVVTKLKPHFRKYEYPRNGPPTFYQVTNN
SKERPDVWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDLQS
FVELVHSSNGTTQMGTNYGGLQESKPKRLKSSKGGKKNVSVVPSHLIQTDVSDIKGGSSI
FSNMMFYFVNVPSTLSLDSLHKMVAENGGTFSMNLNKSVTHCVAADSKGIKYQAAKLRGD
IIHCSWVLDCCSEKKLLRLQPKYFLFLSESSKKKLQEEIDEFSDSYYHDLDLLDIKQLLS
NVNRSADMKTIDYYKKKYCPKKKWSLFHGCCVYFQSSIPSLNPDWEVLWRLALRRLKLEV
SMAGGKVSSSLALATHLVVFSVPGLDVDFGTILKGLSLSEKHLLWNKVLHVVKSQWLEDC
LERDQRLPEETYSLKVIGVHNSNTVECKHDKHDLDLGALSRSDNEEKQNMHSSPDARKQG
REEAPLAKPKILASYEGVGKRKRGRPAGTSRIKGKTATVQARRTRAHIGKGPAKISVNES
DEIGSHDETTHGKEIKMMEGTHEMASNGSSEIQETEIVEAFESSPRGKVAEQEVEKNIGS
QKWYDKVPEVGMTTTLSSQHSERPEKLEVMTDPVQAMLLDMIPSLGVTAARTKDTITDGE
TQPLDPNAEPKKKKKVSYRDVAGELLKDW
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccggacagggaccaacaccaagttcagcgtgctctgcagtctcttcacttgg
atgcagcggagcaagtcgtccgccaagaagcgttccaagttccgcaagttcctcgacgcc
ttctgcgatcctggcaactacttctgccccatccgcctgatccttccgaacctcgaccga
gagcgcggcacctatggtcttaaggagtccgtcctcgccacctgcctcatcgacgctctc
ggcatgtcccgcgactcccacgatgccctccgcctcttcaattggcgcaaaggcggtgcc
cgctccggctccaatgccggcaacttctccctcgtcgcggctgaggtattgcagcgaagg
caagggatggcttctggtggactaacaatacaggacgtgaacgatttgcttgatcgcttg
gcttcttctgaaaatagggctgagaagacatcggttctttctactctgataaacaagaca
aatgctcaggaaatgaagtggattatcatgattattcttaaagatttgaagctgggggtt
agtgaaaagagcatttttcatgagttccatcctgatgctgaagacttgtttaatgtgaca
tgtgacctaaaattggtttgtgaaaggctaaggagtcgaggacaaaggcataaacgccag
gatattgaagttggaaaagctgtgcgcccacaactagctatgagagttgctgatgctaca
gctgcatggaaaaagcttaatgggaaggaagtggttgctgaatgcaaatttgatggtgat
cgcattcaaattcataagaatggaattgagatacacttcttctcaaggaactttcttgat
cactctgaatatgtgcatgggatgtcagatgttattgtacaaaatattctggtcgataga
tgtattcttgatggtgaaatgttggtctgggacacatctctgaatcgttttgctgagttt
ggttcaaatcaggaaatagccaaggctgcaaaggatggactggacagtgatagacagttg
tgctatgttgcatttgatattctttacgtcggggataccagtgtaattcaccaaagcttg
aaggaacggcatgagctcctgcagaaagttgtgaagcctctgaagggtcgtttggaaatc
ttagtacctaacgttggacttggtcttaatattctccgcccttctggggaaccttgttgg
tcactgattgctcataatgtggatgatgttgagaggttcttcaaagaaaccattgagaat
agagatgaagggattgtgttaaaggaccttggttccaaatgggaacctagtgatcggagt
ggaaagtggttgaaattgaagcctgactacattcgtgctggctctgatctggatgttctt
attataggaggatactatggctctggacgtcacggtggggaggtagctcaattcttggta
ggccttgcagagcgtcctgcaccaaacacataccccaggcgatttatttctttctgtaga
gtgggtactggactttctgatgaggagctggatgctgttgtgaccaaattgaagcctcat
tttaggaaatatgaatacccaaggaatgggccaccaactttttatcaagtaacgaataac
tcaaaagaaagaccggatgtgtggattgacagccccgagaaatcaataattctttccatt
actagtgatatccgaactataaggtctgaggtatttgctgcaccatatagcctgagattt
ccgcgtattgaccgagtcagatatgacaagccttggcacgaatgtcttgatttgcaatct
tttgtagaactcgtacattcaagcaacggtactacacaaatggggacaaattatggtggc
ctccaggaaagtaaaccaaaacgcttgaaatcctctaagggagggaaaaagaatgtctct
gttgtaccttctcatttgattcagactgatgtttctgacattaaagggggctcctcaata
ttttcgaatatgatgttttactttgttaatgttccatcaaccctctctcttgattctctg
cacaaaatggttgctgagaatggagggactttctcgatgaatttgaataaatcagttact
cattgtgttgcagctgatagcaaggggattaagtatcaggcagcaaaacttcgtggtgat
attattcattgttcttgggtattggattgctgctcagaaaagaagcttctccgtttacag
ccaaagtatttccttttcctttctgaatcatcaaagaagaagttacaagaagaaattgat
gaattttctgactcatactatcacgatcttgatcttctggacatcaaacagctattaagt
aatgtgaacagatctgcggatatgaaaactatcgactactataagaagaagtactgtcca
aagaagaaatggtctctctttcatggctgctgtgtttacttccaatcgtcaataccatcc
ttgaatccagattgggaagttctgtggagacttgcattaaggaggttgaagcttgaggtt
tccatggctggtggaaaagtcagcagcagtcttgctcttgctacccatttggtagtcttt
tctgttccaggtcttgatgtggactttggaaccatattaaaaggtttatctctgtcggag
aagcatctattatggaacaaggtgttgcatgttgtgaaatctcaatggttggaagactgc
ttggagagggaccaaagattgccagaagaaacatatagcttgaaggtgattggggtgcac
aattcaaacactgtagagtgcaaacatgataaacatgacctggatttaggagctctttct
agatcggataatgaagaaaaacagaatatgcactcttctcctgatgcaaggaaacaagga
agagaggaagctcccttagcaaaacctaaaattttggcctcatacgagggggtcgggaaa
aggaaaagaggaagacctgctggtacaagcaggataaaaggcaaaacagctacggtccaa
gctcggagaacacgggcacatattggaaaggggcctgctaaaatatccgttaatgaatca
gacgaaattggatctcatgatgaaacgacacacgggaaagagatcaaaatgatggaagga
actcatgaaatggcaagcaatggaagctcagaaatccaagagactgaaatagtagaagca
tttgaatcatcacctaggggcaaggtggctgagcaagaggttgaaaagaatattggatct
caaaagtggtacgacaaagttcctgaagtgggaatgactacaactctaagtagtcaacac
agtgagaggcccgagaagttggaagttatgactgatccagttcaagccatgttattggac
atgattccgagtctcggagtgacggcagccaggactaaagatacgattactgatggtgag
acacaacccttggatcccaatgcagagcctaagaagaaaaagaaggtaagctacagggat
gttgctggtgagttgctcaaagattggtaa
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