Cebus imitator (Panamanian white-faced capuchin): 108284566
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Entry
108284566 CDS
T08783
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03013
Nucleocytoplasmic transport
cimi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108284566 (UPF1)
03015 mRNA surveillance pathway
108284566 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cimi03019
]
108284566 (UPF1)
Enzymes [BR:
cimi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108284566 (UPF1)
5.6.2.5 RNA 5'-3' helicase
108284566 (UPF1)
Messenger RNA biogenesis [BR:
cimi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108284566 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
108284566 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
108284566
NCBI-ProteinID:
XP_017356821
Ensembl:
ENSCCAG00000032175
LinkDB
All DBs
Position
Unknown
AA seq
1129 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcccagaccctcactttcctggacacggaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcactctt
cctagccagacgcagacgccccccggcggccccggcggcccgggcggtggcggcgctgga
ggcccgggcggcgcgggcgcgggcgctgcggcgggacagctcgacgcgcaggttggaccc
gaaggcatcctgcagaacggggctgtggacgacagtgtagccaagaccagccagttgttg
gccgagttgaacttcgaggaagatgaagaagacacctattacacaaaggacctccccata
cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgtaataccagc
aagaagtggttctgcaacggacgtggaaatacttctggcagccacattgtaaatcacctt
gtgagggcaaaatgcaaagaagtgaccctgcacaaggacgggcccctgggggagacagtc
ctggagtgctacaactgcggctgtcgcaacgtcttcctccttggcttcatcccagccaaa
gctgactcagtggtggtgctgctgtgcaggcagccctgtgccagccagagcagcctcaaa
gacatcaactgggacagctcgcagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccctccgagcaggagcagcttcgggcgcgccagatcacggcgcag
cagatcaacaagctggaggagctctggaaggaaaatccttctgccaccctggaggacctg
gagaagccgggggtggacgaggagccacagcatgtcctcctgcggtatgaggatgcctac
cagtaccagaacatcttcgggcccctggtcaagctggaggctgattatgacaagaagctg
aaggagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggac
ctcgcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgat
gagatcgccattgagctgcggagcagcgtgggtgcacccgtggaggtgactcacaatttc
caggtggattttgtgtggaagtcgacctcctttgacaggatgcagagtgcgttgaaaacg
tttgctgtggacgagacctcagtgtccggctacatctaccacaagctgctgggccacgag
gtggaagatgtgatcatcaagtgccagctgcccaagcgcttcacggcgcagggcctccct
gacctcaaccactcccaggtttatgccgtgaagactgtgctgcagagaccgctgagcctg
atccagggcccgccaggcacggggaagacagtgacgtcagccaccatcgtctaccacctg
gcccggcaaggcaacgggccggtgctggtgtgtgctcccagcaacattgctgtggaccag
ctgacagagaagatccaccagacggggctgaaggtcgtgcgcctctgtgccaagagccgt
gaggccatcgactccccggtgtccttcctggccctgcacaaccagatcaggaacatggac
agcatgcctgagctgcagaagctgcagcagttgaaagacgagaccggggagctgtcatcc
gctgacgagaagcggtaccgggccctgaagcgcaccgcagagagagagctgctgatgaac
gcagatgtcatctgctgcacctgtgtgggcgctggtgacccgaggttggccaagatgcag
ttccgctccattttaatcgacgagagcacccaggccaccgagccagagtgcatggttcct
gtggtcctcggggccaagcagctgatcctcgtgggtgaccactgccagctgggcccggtg
gtgatgtgcaagaaggcggccaaggctgggctgtcacagtcacttttcgagcgcctcgtg
gtgctgggcatccggcccatccgcctgcaggtccagtaccggatgcaccctgcactcagc
gccttcccgtccaacatattctacgagggctccctccagaacggtgtcactgcagcggat
cgtgtgaagaagggatttgacttccagtggccccagcctgataaaccgatgttcttctac
gtgacccagggccaagaggagattgcgagctcgggcacttcctacctgaacaggactgag
gctgcgaatgtggagaagatcaccacgaagttgttgaaggcaggcgccaagccagaccag
attggcatcatcacgccttacgagggccagcgctcctacctggtgcagtacatgcagttc
agcggctctctgcacaccaagctctatcaggaggtggagatcgccagtgtggatgccttt
cagggacgcgagaaggacttcatcatcctctcctgtgttcgggccaacgagcaccaaggc
atcgggtttttaaacgaccccagacgtctgaacgtggccctgaccagagcaaggtatggt
gtcatcattgtgggcaacccaaaggcgctgtcgaagcagccgctctggaaccacctgctg
aactactacaaggagcagaaggtgctggtggaggggccactcaacaacctgcgtgagagc
ctcatgcagttcagcaagccacgcaagctggtcaacaccatcaacccgggggcccgcttc
atgaccacagccatgtatgatgcccgggaggccatcatccccggctccgtctatgatcgg
agcagccagggccggccctctagcatgtacttccagacccacgaccagatcggcatgatc
agcgctggccccagccacgtggccgccatgaacattcccatccccttcaacctggtcatg
ccgcccatgccgccacccggctatttcggacaagccaacgggccagctgcaggccgaggc
accccgaaaggcaagactggtcgtgggggacgccagaagaaccgctttgggcttcctggg
cccagccagaccaacctccccaacagccaagccagccaggatgtggcatcacagcccttc
tcgcagggcgccctgacgcagggttacatctccatgagccagccctcccagatgagccag
cccggcctctcccagccggagctgtcccaggacagttaccttggcgacgagtttaaatca
cagatcgacgtggcgctctcacaggactccacttaccagggagagcgggcttaccagcac
ggcggggtgacagggctgtcccagtattag
DBGET
integrated database retrieval system
