Cebus imitator (Panamanian white-faced capuchin): 108317962
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Entry
108317962 CDS
T08783
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108317962 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cimi03019
]
108317962 (MTREX)
03041 Spliceosome [BR:
cimi03041
]
108317962 (MTREX)
03009 Ribosome biogenesis [BR:
cimi03009
]
108317962 (MTREX)
03016 Transfer RNA biogenesis [BR:
cimi03016
]
108317962 (MTREX)
Enzymes [BR:
cimi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108317962 (MTREX)
Messenger RNA biogenesis [BR:
cimi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108317962 (MTREX)
Spliceosome [BR:
cimi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108317962 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
108317962 (MTREX)
Ribosome biogenesis [BR:
cimi03009
]
Eukaryotic type
Pre-60S particles
Helicases
108317962 (MTREX)
Transfer RNA biogenesis [BR:
cimi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108317962 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
108317962
NCBI-ProteinID:
XP_017404156
Ensembl:
ENSCCAG00000014177
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEGDSTTMEGTKKDKEKEKGKWKGPPGSADKAGKRFDGKLPSESTNNG
NSKRDADFEGTDEPIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcattcggagatgagctgttcagcgtgttcgagggcgattcgaccactatg
gagggaaccaaaaaagacaaggaaaaggagaaagggaagtggaaggggcctccagggtct
gcagacaaggcagggaaacgttttgatggtaaattaccatcagaatcaactaataatgga
aacagtaagagagatgcagatttcgaaggtacagatgaacccatttttggaaagaagccc
aggatagaagagtcaataactgaagacttaagtttggcagacctgatgcctagagtcaag
gtacaatcagttgaaaccgttgaagggtgtacgcatgaggtcgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgctaaggagtacccattcattctt
gatgcttttcaaagagaagccattcagtgcgttgacaataatcagtctgttctagtatct
gcacatacatcagcaggaaaaacagtatgtgctgagtatgccattgcattggctttaagg
gagaaacagcgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggtgatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggttatatttgatgaaattcattatatgagagattca
gaacgtggtgtagtatgggaagaaactattattttgcttcctgataacgtccactatgtc
tttctttcggctactattccaaatgctcgacagtttgctgaatggatttgccatttacat
aaacagccctgtcatgtaatttacacagattatcggcccactccattgcaacactacatt
tttccagcagggggagatggcctgcatcttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtgcttcgagatgcaggtgatttggccaaaggagac
cagaaagggcggaaaggaggaacaaaaggaccatcaaatgtgttcaaaattgtgaagatg
attatggaaagaaatttccaacctgtgattattttcagttttagtaagaaagattgtgaa
gcctacgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgattgcttatctgatgaagataaaaaactccctcag
gtagaacatgtacttcctcttttgaagagggggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacggagacctttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcccgcaaatttgatgggaaggatttccgatggatttcttctggtgaatacattcagatg
tctggtcgtgctggaaggagaggaatggatgatagaggaattgtaattcttatggtagat
gaaaagatgagcccaacaattggaaaacaattacttaagggctccgctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactgcgtgtagaagaaattaat
ccggagtacatgttggaaaaatccttctaccagtttcagcattacagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaattcccaatgaa
gaaagtgtagttatctattacaagattagacaacagcttgccaaattgggtaaagaaatt
gaagaatatattcacaaaccaaaatactgcttaccttttctacaaccaggtcgtctggta
aaggtaaagaatgaaggagatgactttggctggggagtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaactctggcgaactggatcctttgtatgtagtggaagtacttctg
cgctgtagcaaagagagcttgaaaaattcagctacggaagctgcaaaaccagctaaacct
gatgagaaaggagagatgcaggttgtcccagttttggtgcatctcctgtctgctatcagc
agcgttagactttacattcctaaagatcttcggccagtggacaatagacagagtgtgtta
aaatcaatacaggaagttcagaaacgttttcctgatggcgtccccttattagaccctatt
gatgatatgggcattcaagatcaagggctgaaaaaagttattcagaaagtagaagctttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaattgaag
aaagcaagaactgtcctacaaatggatgaactcaaatgtcgcaaacgtgttttaagaagg
ctgggatttgctacttcttctgatgtaatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctt
tctgcagaacaggcaacagcattattaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagaacaattagcaggaccgcttcgtcaaatgcaggaatgtgctaaa
agaatcgcaaaagtttctgcagaagccaaattggaaattgatgaggaaacttacctaagc
tcatttaaacctcacttaatggatgtagtatacacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaattgcttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttgtag
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