Ciona intestinalis (yellow sea squirt): 100175059
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Entry
100175059 CDS
T01056
Name
(RefSeq) cation channel sperm-associated protein subunit beta isoform X1
KO
K16893
cation channel sperm-associated protein subunit beta
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cin03037
]
100175059
04040 Ion channels [BR:
cin04040
]
100175059
Cilium and associated proteins [BR:
cin03037
]
Motile cilia and associated proteins
Sperm associated proteins
100175059
Ion channels [BR:
cin04040
]
Voltage-gated cation channels
Calcium channel, sperm-associated (CatSper)
100175059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CATSPERB
CATSPERB_2nd
HJURP_mid
Motif
Other DBs
NCBI-GeneID:
100175059
NCBI-ProteinID:
XP_002123403
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All DBs
Position
9:6499610..6507360
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AA seq
977 aa
AA seq
DB search
MHPLWYYFTAFMCILTVHNSYATNVIPSHPKIELHCKQIGKPGRIRLVLLKQASPSVIRC
ELYKNNAMLNLQATLFHGKKTRPSKLTYVTFNSTWSKKYSVISRRNQTEWTFSIAERDFF
HHVTDFEIPVTQTPTYVHTSLKWYMRVSMCHPRVNPCAVVTMVIVHQATDHLFKKTWGVW
VPGIPPNEYTNLVSSTSSYIHTTHVPCQSGSSLMFLSNTTVTYIAVSWNSFLPNSTLFYK
LTCDETDVSPCSSVQVYHAIITSYNVMLVTEHGILVSNSLGKECSSSACNNIKFHRVGDS
LHTYSPVWAEGKLSYTPVCIRLTSIAPLDGVVLFTFKSGNGKNVIASSSETFKVWKIYST
NLEKVMAVYDQQTRSVISIHQPNNNSSVSQSRMLSSRKQRFSSFSFPTTGHVTCMLMMPN
HYLYAAVSNTMWLSTDGGNMYSKIHELSSSEQVIKLVGHGDENSILVLTSTGAVWWGKAG
FLGLKHLLTVQNPSKGMDITFDGTGHPVLLNSESGANPLHARLVDVFIKSEVCRYSISSN
LQESLYYLDLSTSFSFSVSATMKNDNSIIPTGNSMVSITMGNPQIFKFELNEYRASKFVH
LVQVVLTARYNIKGVSSISFNLKSVRSPCSVTSYTLLIVADCPISKQLHFEYSSLLITAK
ETVPVQDYVSSNVSTYELLQELPRNYRPPSSMAVAIPISGNVYNVHPQTISDERFMTYSY
SAKRRLKGFCDNKLNRTSCSCTSAHKFSSLEKYSDCREKVYKVLYDYTYKLNFSMLHNKM
HYTHNEDSEDISKYLIYIEEVNGRDDTVYFASDNADTFCSTKPNQVLCRSRVDEHTPPDS
ESAKLLNFLTSGKTKRVFNASQLSIKFLGMGLFHFRVTLATGYSFCSLQDEFQAYVINPP
LPFPTGTIIRLTVSFSMGAVMVAIYMRLIFKKYNKEDKNVESNVQSVNNHHRRPRMSIVT
EEDMKALRSKLRSSFQA
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgcatcccttatggtattattttactgcttttatgtgtattttgaccgtacacaatagc
tatgcgaccaacgtcatcccgagtcaccctaaaatcgaacttcattgcaagcaaatcggt
aaaccagggaggatccgtctagttttattgaaacaagcttcaccgtcggttatccgttgc
gagctgtataaaaataacgcgatgttaaatttacaagcaactctttttcatggaaagaag
acccgcccttccaaattaacttatgtaacgtttaattccacctggagcaaaaagtacagc
gttatatcacgtagaaaccagacagaatggacattctcaatcgccgagcgggatttcttt
catcacgtgacggattttgaaatcccagtgacgcaaacgcctacgtacgtacatacgtca
ttaaaatggtacatgcgtgttagcatgtgtcatccccgtgtaaacccttgcgccgtggtg
acaatggtcatcgtgcaccaagctacagatcacttatttaagaagacatggggtgtatgg
gttcctggtattccaccgaatgaatatacaaaccttgtatcatccaccagcagttacatt
cacaccactcatgttccctgccaaagtggaagctctttaatgtttctttccaacactaca
gttacatatatagcagttagttggaattcatttcttccaaactcaacattgttctacaag
ttaacatgcgatgaaactgatgtctccccgtgtagcagcgtacaagtctaccatgcaatc
atcacttcatataacgtgatgctcgtgacagaacatgggattctggtctccaattcattg
ggtaaagaatgctcttcatcagcttgtaacaatattaaatttcaccgtgttggtgattca
cttcatacatacagccctgtatgggctgaagggaagttatcttatactcccgtttgcatc
aggttaacgtctatagcgccacttgatggtgttgttctgtttactttcaaatctggaaat
ggcaagaatgtaattgcttcctccagtgagacgttcaaggtttggaaaatttattcaacc
aacctagaaaaagttatggctgtgtatgaccaacagactagaagtgtcatctcaatccac
caacccaacaacaactcctcagtttcgcaatccagaatgttgtcttcgagaaaacaaaga
ttttcttcatttagttttccgaccaccggacacgtgacttgcatgcttatgatgccaaac
cattatctttatgctgctgtatcgaacacaatgtggctttccactgatggtggtaacatg
tacagcaaaattcatgaattgtcgagttctgaacaagttattaagttagttgggcacgga
gatgaaaactcaatcctggttttaacgagcactggtgcagtttggtggggaaaagcgggc
ttcctaggtttaaaacatctgctcactgtccagaacccatcaaaaggcatggacataaca
tttgatggtactggccatccagtgttactaaacagtgagtcaggagcaaacccgctgcat
gcaaggctagttgatgtgtttatcaagtcagaggtttgcagatattctataagttcgaac
ttacaagaaagtttatattatttggatctttcaacatcctttagtttctctgtgtccgcc
accatgaaaaatgacaacagtataattcctaccgggaactcaatggtatcaattacgatg
ggaaatccacaaatcttcaagtttgagttgaacgagtatcgcgcatccaagtttgtccat
cttgtgcaagtggtgttgactgctcgttataatataaagggagtgagttctatctcgttc
aaccttaaaagtgttcgtagcccatgctcggttacctcatacaccctgttgattgtagca
gattgcccaatctcaaagcaacttcactttgaatattcatccctgcttataactgccaaa
gaaactgttcctgttcaagattatgtgtcttctaatgtcagcacatatgaactactgcaa
gaacttccacgtaactaccgacccccttcatcgatggctgtagctattccgatatcgggg
aacgtctacaatgttcacccacagaccatttctgatgaaaggtttatgacatacagttac
tcagctaaacgaagattaaaaggattctgcgataataaattgaaccgaacatcatgtagt
tgtacctcagctcataagttttcttcacttgagaaatattctgattgcagagaaaaagtt
tacaaagttttatacgactatacatacaaacttaacttctccatgctgcacaacaaaatg
cattatacccataatgaggattctgaagatatttccaaataccttatttatattgaggaa
gtgaatgggagagacgacactgtgtattttgcaagtgataatgcagatacattctgttcc
accaaaccaaaccaagttttatgtcggtcaagggttgacgagcacaccccgcccgacagc
gaatctgccaagttgctcaactttctcacctctggtaaaacaaagagagttttcaatgca
agtcaactttctattaaattcttgggcatgggcctttttcacttccgtgtgacattggca
accggatattcattctgttcgcttcaagatgagtttcaggcttatgtcatcaaccctcca
ttaccgttcccaactgggaccattattcgtctcactgtttcattctcaatgggagcagta
atggtggcaatctacatgaggctgatatttaaaaaatacaacaaagaagataaaaatgtg
gaaagtaatgtacaaagtgtgaataaccaccacagaagaccacggatgtctattgttact
gaggaagacatgaaagcactgaggagcaaattaagatccagcttccaagcttag
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