Ciona intestinalis (yellow sea squirt): 100175214
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Entry
100175214 CDS
T01056
Name
(RefSeq) methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X4
KO
K01968
3-methylcrotonyl-CoA carboxylase alpha subunit [EC:
6.4.1.4
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin00280
Valine, leucine and isoleucine degradation
cin01100
Metabolic pathways
Module
cin_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09100 Metabolism
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
100175214
Enzymes [BR:
cin01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.4 methylcrotonoyl-CoA carboxylase
100175214
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
Biotin_carb_C
Biotin_carb_N
Biotin_lipoyl
Dala_Dala_lig_C
ATP-grasp
RimK
HlyD_3
ATPgrasp_ST
ATP-grasp_3
RnfC_N
GARS_A
RPOC_hybrid
Motif
Other DBs
NCBI-GeneID:
100175214
NCBI-ProteinID:
XP_002128368
Ensembl:
ENSCING00000019260
ENSCING00000020099
LinkDB
All DBs
Position
7:complement(5729945..5739090)
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AA seq
667 aa
AA seq
DB search
MKTAKNMGISTVAVYSEVDRSQMHVQMADEAFCIGDEQGYLGMDGILNVAKDAGAEAIHP
GYGFLSENAEFAELCSSNGVIFVGPPPSAIRDMGIKSTSKRIMSAANVPIIEGYHGDEQS
DSRLLEEADRIGFPVMIKAVRGGGGKGMRIATSRDVFLEQLSSARSEAIKSFGDDVMLVE
KYVDRPRHVEVQVFGDHHGNAVHLFERDCSVQRRHQKVIEESPAPGISLRTRTNLGEAAV
RAARAVGYVGAGTVEFVMDPQQNFYFMEMNTRLQVEHPVTEMVTGTDLVEWQLLVAQGHP
LPSTQQEICDRTRGHAFEARIYAEDPDDDFMPRAGPLIHLSAPKVTPNTRVETGVRQGDV
VSHYYDPMIAKLVVWGKDRGSALRGLVRGLGEYSVVGLDTNIKFLQRLALHPSFKAGDVH
TGFIEQHNEALFPNKPTKISPHAACRAALGYLLLEETPNTQDPFVECSNFQVNIPSPRTI
ELTVGDCDVIVVITPLSDGKYSMNVNGDVTNENNDMIVSGSLTKDIMTSSMNLKTTIDDI
TTSEKMVFIPGESHVRFSDPDSIHLYPTNGEESLKFSLPLPKYLSEFATSGVSGDPMAPM
VGEIQKVLVAPGEEVAQGQPLVVMIAMKMEHTIRSPRDGVVESVHVAAKDNVARFDVLVK
LVPEEEE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaagacggcgaaaaacatgggtattagcactgtagcagtgtacagtgaagtagataga
tcacagatgcatgtccagatggctgatgaagctttctgtattggagatgaacaaggttac
ttaggaatggatggtatattgaatgtagcgaaagacgctggagccgaagccatccaccca
ggttatggatttctgtcggaaaacgcagagtttgccgagttatgttcaagcaatggagtc
atatttgttggcccgcccccttctgctatccgagacatggggattaaaagtacttcgaag
agaataatgtctgcagctaatgttccaattattgaaggttaccatggtgatgagcagtcg
gactcacgcctccttgaagaagcggatcggatcgggttccctgtgatgataaaagctgta
agaggaggtggagggaagggaatgagaatcgcaacatccagggatgtcttcttggagcaa
ttatcgtccgcaaggagcgaagcgatcaagtcgttcggcgacgatgtgatgttggtagag
aaatatgtggatcgaccgaggcatgtagaggttcaggtgttcggagaccaccatggcaac
gctgtccacttattcgagcgcgactgtagtgtccaacgtcggcatcagaaagttattgaa
gagtccccagccccgggtatttcccttcgcacccgtaccaacctgggtgaagccgctgtc
cgtgcagcgagggcagtgggttacgtcggggcagggacggtggagtttgtgatggacccc
caacaaaacttctacttcatggagatgaacacgaggttacaggtagaacacccagtcaca
gaaatggtaacagggacagacttggttgagtggcaattattggtagcacaaggacatcct
ttaccatcaacccagcaagaaatatgcgatcgaacacgaggtcatgcttttgaagcgagg
atatatgctgaagaccctgacgatgacttcatgccccgagccggacccctaatccatcta
tcggccccaaaagtcaccccgaacacccgcgtcgagactggggtccgccagggtgacgtg
gtatcccattactacgaccctatgatcgcaaagctagtcgtttggggcaaagacaggggt
tctgcgctgcgagggttagttaggggtctgggtgaatattctgtggttggattagacaca
aacatcaagtttttacaacgacttgctcttcacccaagcttcaaggctggtgacgtacac
actgggtttattgaacaacacaacgaagcattgtttccaaacaaacccacgaaaatatca
cctcatgctgcttgccgcgctgcactagggtatttacttctagaagaaacacctaacact
caagatccatttgtagaatgttccaattttcaagtcaatatcccgagtccgagaacaata
gagctgacagtgggtgattgtgatgtcatagtggtcattactccccttagtgacggaaaa
tactcaatgaatgtgaatggtgatgtcacaaacgaaaacaatgacatgattgtctcgggt
tcgctaacaaaggacattatgacatcatcaatgaatttaaaaacaaccattgatgacatc
acaaccagcgagaaaatggtgtttatccctggagagtctcacgtcaggttttccgaccca
gattcgatccatctttacccgacaaacggagaagagtctttaaagttttcgctcccgttg
ccgaaatacctcagcgagtttgcgacatcaggagtgtcgggcgacccgatggcccccatg
gtgggcgagatacagaaggtgctggtggcacccggtgaagaggtggctcaagggcaaccc
ctagtggtgatgatagcgatgaagatggaacacacgatacgctcgccacgcgatggggtg
gtggagtcggttcacgtcgcagcgaaagataacgtcgcgcgtttcgatgtgttggttaaa
cttgtgccagaagaagaagaatag
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