Ciona intestinalis (yellow sea squirt): 100175305
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Entry
100175305 CDS
T01056
Name
(RefSeq) E3 ubiquitin-protein ligase HECW2-like
KO
K12168
E3 ubiquitin-protein ligase HECW2 [EC:
2.3.2.26
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100175305
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
100175305
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
HECT type E3
100175305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
HECW1_helix
PDZ
WW
C2
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
100175305
NCBI-ProteinID:
XP_009857929
LinkDB
All DBs
Position
3:complement(417576..436728)
Genome browser
AA seq
1562 aa
AA seq
DB search
MPSYAPEGQSRESSYISFTITGLSGFNLKKGVFFNPDPYVKLRILPGPNCRKCAHHKQRH
HTKQVEDTTNPTWKEQFYIQVLRSDIIELEVKDRFDKGRPVFRRFLGKLEVPVGEILERL
NCSEQRYTGALTKRTPLDHTSGSLSFVIADGRSSLFGSYPYNLNNGRSQVHRASSSSNSD
LNFSIRSHSIGSFANDVSEALDECITRHFTETDMTTVTNGTLGEFHASSTDDETSPPTEE
TSKENGTNVDHEDMEEDPFTASELTQVTSLIHNQNGNSSQGQEAVPAIDRIIAETSEEST
ITSLLQTTEPHESVCDVENEPALPSTTDVMLNTQQSVLDGVESEDHVTGNASNDQVLETL
DENIIPVITDGAESESEIVNTGDNFLPHEDTTDVTANKESSEIVDTKEQTTTSDTQTSVT
LTEPSTVELASNTADNAAHVASFTQNTECANAANALIQNNPEQKPKVKHKPAEREKLLNL
LRFAALKEASCDNSDGNLVTLTIHRNAEDNHLGFNIMGGAESKYDILRKMGIFVTRVEPA
SPAEHAGVQIHDRLILVNGTSVRNSSHTAAVSELKNAGHEVEVVVERRDFPLNAFASEQN
SPAHQVGCSIHRRASLPVSFSSQKNRPLQTSSTTFMGSGVLRAFPARSTQELIEDELKKS
PTSQKSPLSYFQPSTSPTLPKLPPSGRLSDTLERGQSLLIKRKCSTSQDKPSQEGLPPNW
EACRDRHDRLFYLDHVNRVTQWERPKLSDFPPASGSNKENLEEKVDEILENLPQKTIRRV
RRSNSVKGDRNYERVMMRYQSIKRVMRQTAIPEDQEASTSSSPVHEVIEPQQELSPPKDD
PPQKDASPIATNVTETDHPEPTTSTSSGSRSTMSTIDESESGDNLDKNPAFQFITQPDFF
RLLSTTPDAYSLYMSSSSLKLILSKINRCPQHFKDYQHNKDLVKFINCFADTSKPLPSGW
EKKVDGHRKPFFIDHNLRSTTFFDPRLPCPDKPNNVENATSTSQEEDRDDTNAPDRMEVQ
SPLATEPPVIAPRPADSLSMRSRQKKPPVATPTQSPAQQQAVAPVSYNEKVVAFLKQSNI
LDILKERYPSITTSTVLAERVKTIKNEGLPALERYCNSMQLNIMLSLFEEEIMSFVVQSD
VRPVLAERPRSNVDSVVSRSSASPSASPITTRSRTNTPLLRNFDSKLRSFYRKLEQKGYG
QGPGKIKLTVHRDNLLEDAFRKVMLLPRKQLQRSKLFVSFAGEEGLDYSGPSREFFFLIS
RELFNPYYGLFEYSAVDTYTVQISPLSTFADSPHEWFRFAGRIIGLALVHHCLLDAFFTR
PLYKMLLRSKCDLSDLRYEDEQFYQSIMWIKDNDITDVLDLTFSVNEEMFGKIEERELKP
NGKNIAVTEKNKKEYIERMVKWRVVRGTREQTNMLIRGFNEVIDLRLVSVFDANELELVI
CGTADIDLNDWRQHTEYRGGYYDQHPVVINFWEALDQFDNERRLRLLQFVTGTSSIPYEG
FAALRGPNGPKRFCIEKWGKPDCLPRTHTCFNRLDLPPYDTFNLLWEKLVIAIEETNTFG
ME
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgccatcttatgcaccagaaggacaatcaagagaaagttcttacatttcgtttactatt
acaggcctcagtggattcaacttgaagaaaggagttttttttaatcccgatccgtatgta
aagttaagaatcttgcctggtccaaactgtaggaaatgtgcccatcataaacagaggcat
cacacaaaacaagttgaagatactactaatccaacatggaaagaacaattttacatccaa
gttcttcggtctgacatcatcgaacttgaagtaaaagatagatttgataaaggaaggccg
gtgtttcggaggtttcttggaaaactagaagttccagtcggtgaaatcctggaaagatta
aactgcagtgagcaaaggtacactggtgcacttacgaaaaggacgcctctggatcataca
agtggaagtctttcatttgttattgctgatggtcgttcaagtcttttcggttcatatcct
tataatcttaacaatggtagaagtcaagtccaccgagctagttcaagctcaaatagtgac
ctgaacttttcaatcaggagtcacagtatcggttcatttgccaatgatgtttctgaagca
ttagatgaatgcataacgcgacattttacagaaaccgatatgaccacggtgaccaacgga
acattgggtgaatttcatgcaagttcaactgatgatgagacttcaccaccaacagaagaa
acttcaaaggaaaatggaactaacgttgatcatgaagatatggaagaagacccgtttact
gcatcagaattgacacaagtaacctcgcttattcacaaccaaaatggcaacagttctcaa
ggacaagaggcagtgccagccattgaccggataattgctgaaacgagtgaggaatcaact
attacttccttattacaaaccacagagccacacgagagtgtatgcgatgtggaaaatgaa
cctgctctaccttccaccacagatgtgatgctcaatacgcagcagagtgtattagatggc
gttgaatctgaggaccatgttacaggaaacgctagcaacgatcaagtgctggaaacacta
gacgaaaatattataccggttataacagatggcgctgagtcggaatcggaaattgtaaat
accggagataattttctgccacacgaggataccacagatgttacagcaaataaagaaagt
tcagaaatagtggatacaaaggaacaaactacaacatcagatactcaaacatctgttaca
ttaactgaaccttctacagtggaattggcgtccaacacagctgacaacgcagctcatgtt
gcatcatttacacaaaacaccgagtgtgcgaatgctgccaatgcattaatacaaaacaat
cctgaacaaaagcccaaagtaaagcacaaaccagcagaacgagagaaattgttaaacctt
ctccgttttgctgctctaaaggaggcgtcatgtgacaactctgatgggaacttggtgaca
cttacaatacacagaaacgcagaggataatcatcttgggtttaatataatgggaggagcc
gagtccaaatatgacatactgagaaaaatgggtatttttgtgacacgtgtggaaccagcg
agcccggcagagcacgcaggggttcaaatccacgacaggttaatcttggttaacgggaca
tcggttcgtaactcatcgcacaccgctgcagtaagtgagctaaagaatgccggtcatgaa
gttgaagtggtcgtggaaagaagggattttccattaaacgcgtttgcttcggaacagaac
tccccagctcaccaggtgggatgcagcattcacagaagagcttcgttacccgtctcattt
tcatcccagaagaatcggccgctacaaacttcttcaactactttcatgggttcaggtgtt
ttacgagcgtttccggcacgttctacacaagaactaatcgaagatgaattgaaaaaatct
cccacatcccagaagagtcccctctcttactttcaaccatcaacatcaccaactttaccg
aaactaccgccatccggacgactttccgacactcttgaacgaggacaaagtcttcttatt
aagagaaagtgcagcacatcgcaagacaagccatcacaagaaggcttgcctccaaattgg
gaagcatgtcgtgaccgccacgaccgacttttttatctcgatcacgtgaatcgagtcact
cagtgggagcgaccaaaactctctgatttcccccccgcatccgggagcaacaaggagaat
cttgaggagaaagttgatgagatccttgagaatcttcctcagaagacgatccgaagagtt
agaagatcaaactcggtgaaaggagatcggaactatgagcgtgtgatgatgaggtatcag
agcatcaagcgagtgatgcgacaaactgccatcccagaagatcaagaagcttccacatcc
agctcaccagttcatgaagtcatcgaacctcaacaggagctaagtcctccaaaagatgat
cccccccaaaaagatgcttcccccattgcaactaatgttacagaaaccgaccatccagaa
ccaacaacgtcaacatcgagtggaagtcgttcaaccatgtccaccatcgacgaatcagaa
agcggggataatttagataaaaacccggcttttcaattcatcactcaacctgatttcttc
agactacttagcacaacgcctgatgcatacagcctgtacatgtccagctcaagccttaag
ttaatcctctccaagattaatcgatgtccgcaacactttaaggattatcaacacaacaaa
gatcttgttaagtttattaattgttttgccgacaccagcaaaccgcttccaagtggttgg
gagaagaaggtggacggacatcggaaacctttcttcatcgatcacaacctaagatcaaca
actttctttgatccaaggttgccttgtccagataaaccaaacaatgtagagaatgcaact
tccacttcacaggaagaagatagggatgacaccaacgcaccagatcgaatggaagttcaa
tcaccattagcaaccgaacccccagtaatcgctccacgaccagcggacagtctttccatg
cgatctcgacagaagaaaccacccgttgcaactccaacccaatccccagcacaacaacaa
gcagttgctcctgtgtcttataatgagaaagttgttgcgtttttgaagcaatcgaacata
cttgatatattaaaagagagatacccgtcaattacaacaagcactgtacttgcagaacga
gtcaaaactattaaaaatgaaggtttaccagctcttgaaaggtattgcaacagcatgcag
ttaaacatcatgctaagtttgtttgaagaagaaattatgagttttgttgtacaatccgat
gtgcgtcccgtattagctgagcgaccacgatcaaatgttgacagcgtagtaagcagatca
tctgcgtcaccaagcgcttctccgataacaactcgttcacgtaccaacacccctctcctt
cgtaactttgattcaaaactacgaagcttctacaggaagttggagcaaaaaggatacggg
caaggacctgggaagatcaaactcactgtgcatcgcgacaacttgctggaagatgcgttc
cgtaaagtgatgctgttaccacggaaacaacttcaacgaagcaaactgtttgtctcattc
gcaggagaggaaggattggactacagtggtccatcacgtgaattcttcttcctcatatca
cgggagttgttcaatccttattatggtttgtttgaatattcagcagtggatacatacaca
gtacagatcagccctctgtctacatttgctgacagcccacatgaatggttccgatttgct
gggaggattatcggacttgctctcgtgcatcattgtctcctggatgcttttttcactcgt
cctctctacaagatgctcctccgatccaaatgtgatctctcagatcttcgttacgaagat
gagcagttttatcaatccatcatgtggattaaagataacgacatcacggatgtgctggat
ctcacatttagtgtgaatgaagaaatgtttggcaagattgaggaacgcgagttaaaaccg
aacggaaagaatatcgctgtaaccgagaagaataagaaggaatatattgaacgtatggtg
aagtggagggtggtacgaggtacacgggaacaaactaatatgcttataaggggattcaat
gaagtgatcgaccttcggttggtttctgtgtttgacgcgaatgaacttgagcttgttata
tgcggtacggcagatattgatcttaatgattggaggcaacatacggagtatagaggaggc
tactacgatcagcacccggttgttataaacttttgggaagctttggatcagtttgacaac
gaacgccgtctgcggttgctacagttcgtcacaggcacaagtagtattccttatgaagga
tttgcggctctgcgtggtccgaacggccccaagcgattctgtattgaaaagtggggcaaa
cctgactgcttaccaagaacgcatacttgctttaaccgtctcgaccttccaccgtatgat
acctttaatctgctatgggagaaactagtcattgctatcgaagagacaaatacgtttggg
atggagtga
DBGET
integrated database retrieval system
