Ciona intestinalis (yellow sea squirt): 100177599
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Entry
100177599 CDS
T01056
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47 isoform X1
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cin01002
]
100177599
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100177599
Enzymes [BR:
cin01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
100177599
Peptidases and inhibitors [BR:
cin01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
100177599
Ubiquitin system [BR:
cin04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
100177599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
USP47_C
UCH_1
Motif
Other DBs
NCBI-GeneID:
100177599
NCBI-ProteinID:
XP_018673158
LinkDB
All DBs
Position
2:complement(3073393..3100174)
Genome browser
AA seq
1721 aa
AA seq
DB search
MSVILFDQSSVKDDEAKCSCVVKDVLKTNGDRFILTLPSSSTFANLYSEVGKKVQYVSGT
FNLVFVCTKKVKDEYEAHSEVEIGEEDQHHLDSTLSTTSKNFLEIREKLGVAVEMVYPST
ILEDMGPATSSSCGGYRVDSESHMHRRMAVSSPDTDKLNEHIRQKADEMASNRLSNASKC
PTENDEPKDVRFVGLVNQAMTCYLNSLIQTLYMTPEFRNAMYKWECHNQDDTTSSIPYQL
QHLFLLLQTSNKESVETTGLTRSFGWDSSEAWQQHDIQELCRVMFDALENTFQGTDQADL
IKRLYEGTMKDYVQCCECHHESARNDTFLDVPITIRPFGATTSYKSVIEGLNAFVEPETL
DESNQYYCEKCDKKCDAKKGLKFTKFPYLLTLQLKRFDFDYSTMHRIKLNDCMQFPQILN
LNSFTEDTSKDTTSSSTDDDPVNNEEMDDLCEENKEQVDEEDTSSHDSGHDPDRNLPGGS
NGVGMNEQSSEEEASSVDEGIDFESQLSHRRKRRNSWWLNDEEALVDSYLQEGPYVYELF
SIMIHSGSAAGGHYYAYIKSFENNRWHSFNDQIVSSITNLDIEKTFGGVSYPRTSSSYYS
TFSSSSSTNAYMLMYRQINKQRNSMFMETTELPSHIQDLVHREEEEERLRIMKIEQERNM
CSIRLFLRHPSLVGHLVQPILDKTFEFHKDTTLVDAVKQAHMLMRIKSEVVPVDRCRLVK
YDHINDVLDRSYDIDSEDGEKTLSQLLGGPRNSYLFDLLLETRDEGEKFEKYECGGVTLK
IFLADPEALNLHEQVTIRVTEQQTVLDMKTRIAEKLNLSLGSMLVVHERYRGECHILTKD
SKTLKSEGFFRSAKLYVDLMTEEESSSDSLKLEDTRLWNILDKIANLLTINIVLPSEVTE
YFDNMQQAMEKTNLDSKLNGQASSSSSDEGVGSLGDSSGNSSSPPQNPPEAVESMNDDET
MDSNCGEIESFWQIPELSHEDQTNEGERRRNNSYDNDSMLSSVLNDLPGKLQKRFEETGY
MIPASPTSSLKCNSSQSDPPSLMTDMEFDEMANESFDASNYNDDVEQVLSVESEGSSLST
SCSTLGSTDTICHPVEGPCHGPEMSPAEVVRKSVDVNQSEVVAPCHCPKPLATGLPKYST
GKCYPGHVVQCAALEPTLDYTKALMYADSDSNTTGDPSITDNRTNPDGTGDAHVCAHKPK
QLPIVTNEPVKSVMWNDNVSVAPDATREPCDSCHEKSTAPSSSNVNFCSPQISCGACGSS
SSQYMKESTSQDLPNLSSTAGSSASAPKDIPESSEACEKINPLFSCSPYYKKSILSSSEG
ILDSVSRSRRERTISCSSAASDGWGVSSEIAQKQFYFRVLEVQQNENEENKPCKELHVEM
DKRMPLLSLKRHLAHFVGTATRRFVIYRKYASGQENEMSQLTEDFRSIPNSTLFVVKLGR
ALRKDEYRCKLYQLKLYEEETAKPLMNWVIQRGLTVGDARNLLCEDISEQCDIHTQPERI
RIRKKMWKTPSQVYLENDKFGTNISLYGTIEFFIEFLDKPEPKTAANQLVLLCRRWRPSL
LKFEDFEEVVLKDEVVSSTYLGWNADHLRKQLAVVSGIPIDDIQMAKGRGMFPFRTSVLD
ADTSLDWVPTSTSPHTFSMHLTEDGTVVFYRDKNEEIKEITEEERKIIMDEEMKSNSTIS
ASTKTNKELNGPSTKPVSYRREKALKIFIPPSRNKEVTTEL
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcatcttatttgaccaatcatctgtcaaagatgatgaagcaaaatgttcgtgt
gttgttaaagatgttttgaagacaaacggagatcgttttatccttactttgccttcttct
tccacttttgcaaacctgtattcggaggttggcaaaaaagttcaatacgttagtggaacc
ttcaacctcgtcttcgtctgcaccaagaaagtcaaggatgaatatgaagctcattcggaa
gtggaaattggtgaggaggatcagcatcacctggattcaacactcagcacaacttcgaaa
aattttctggaaattcgcgaaaaacttggagtggctgtagagatggtatacccaagtact
attttagaggacatgggcccagccacttctagtagttgtggaggatatagagttgattca
gaaagtcacatgcataggaggatggctgtttcctcacctgacacagataagttaaacgaa
cacattcgtcaaaaagctgacgaaatggcttctaatcgcctctccaatgcctccaagtgt
ccaacagaaaacgacgaaccaaaagatgttcgttttgtcgggcttgtcaaccaagctatg
acatgttacctcaacagtctcatacaaactctttacatgactcctgagtttcggaatgca
atgtacaaatgggaatgtcacaaccaagatgacacaacaagtagcatcccatatcaactg
caacatctgttccttctccttcaaacttccaacaaggagtcagtagagacaactggcctc
actagaagctttggttgggatagtagtgaagcttggcagcagcatgatatacaagagtta
tgtcgtgttatgtttgatgcgttggaaaatacattccaaggaacagatcaagctgatttg
atcaaacggctttatgaaggaacaatgaaggattacgtccaatgttgtgaatgtcatcat
gaaagcgcaaggaacgacacgtttcttgatgtcccgatcaccatacgaccgtttggtgca
accacaagctacaaatctgttattgaaggtttgaatgcatttgttgaaccagagacactg
gacgagagcaaccaatattactgtgagaagtgtgacaagaaatgtgacgcaaagaaaggg
ttaaagttcaccaaattcccatatcttctgacacttcagctgaagaggtttgattttgat
tattcgaccatgcatcgaatcaaactcaatgattgcatgcagttcccacaaatactaaat
cttaattctttcacagaagatacaagcaaggacactacatcttcatcgacggatgatgat
ccagtaaataatgaggagatggatgacttgtgtgaggagaataaagaacaagttgacgag
gaagacacaagcagccacgacagcgggcacgaccccgatcgtaatcttcctggaggttcc
aacggtgtcgggatgaatgagcaatccagtgaagaggaggcgagcagcgtggatgagggg
atcgactttgaatcccaactctcccatcgaaggaagaggaggaacagttggtggttgaat
gatgaggaggcgctcgtggactcctatcttcaggagggaccgtatgtttacgaattgttt
tcaatcatgattcactctggcagtgctgcaggtggccactactatgcttatattaagtca
tttgaaaacaacagatggcatagtttcaatgaccagattgtatcctcgattaccaacctt
gatattgagaaaacatttggaggagtaagttacccacgtacgtcatcatcgtattactca
acattttcaagttccagttctacaaatgcttacatgttgatgtatcgacaaataaacaaa
caaagaaattccatgttcatggaaacaacggagcttccatctcacatccaggaccttgtt
catagagaagaagaggaggagaggttgaggatcatgaagatagagcaggagaggaatatg
tgtagcatcagattatttttacgccacccatcacttgtgggccacctggtacaaccaata
cttgataagacatttgaattccacaaagacacgacattagttgatgctgtcaagcaagct
catatgcttatgagaataaagagcgaggtggttccagttgaccgatgtcgtttggtaaag
tacgatcacattaacgatgtgcttgaccgatcttacgatattgacagcgaggatggagaa
aaaactctcagccagttgttgggtggtcctcgcaactcgtacctgtttgatttactcctg
gaaacaagagatgaaggcgagaagtttgaaaaatatgaatgtggtggagttacactgaaa
atattccttgctgatccagaagcactgaacctccatgagcaagttacgatccgtgtgact
gagcaacagactgtgctcgatatgaagactcgcatagctgagaaactgaacctctctctt
ggttcaatgctggttgttcatgaaagatatcgtggggagtgtcatatactcaccaaggat
tctaaaacattaaaaagtgaaggattcttcagaagtgccaaactttatgttgatttgatg
actgaagaggaaagttcttcagactctttgaagctggaggacactcgtctatggaacatc
cttgataagatcgctaatcttcttacaatcaacatcgttttaccatcagaggtgactgaa
tacttcgacaacatgcagcaagccatggagaaaaccaacctggattccaaattaaatgga
caagcttcatcttcatcaagtgatgaaggggtggggtcacttggtgacagtagtgggaat
tcctcgtcaccaccccaaaatccacctgaggcagtagagagcatgaatgatgatgaaaca
atggattcaaactgtggcgaaattgaaagtttttggcaaattcccgaactcagccacgaa
gatcaaactaatgaaggggaaaggagacggaataatagttatgataacgattcaatgttg
tcttctgtgctaaatgatctgccagggaaactgcagaagagatttgaagaaacaggctac
atgatccctgcctcccccaccagttcattgaaatgcaactcctcacaatctgaccctcca
tctcttatgactgacatggagtttgatgagatggcgaatgaaagttttgacgcctcaaat
tataatgatgatgtagagcaagtgttgtccgttgaaagcgaaggaagtagtttaagcacc
tcgtgttccacgttgggcagcactgacaccatatgccaccctgttgaaggcccatgccac
ggcccagagatgtcccccgcagaggttgttcgtaagtcagttgacgtcaaccagagcgaa
gtcgtggcaccgtgccactgccccaagccacttgccacgggtttgccaaagtactcaaca
gggaaatgttaccctggacatgttgtacaatgtgctgcactggaacctacattggattac
accaaggcactgatgtacgctgacagtgattcaaataccacgggtgatccatcaataaca
gacaacagaaccaaccccgatgggacaggtgacgcacatgtatgtgcccataaaccaaaa
caattacccatagttacaaacgagcctgtaaaatcagtcatgtggaacgataatgtaagt
gtggctcctgacgccacaagggagccgtgcgactcgtgccatgaaaaatctacagcacca
agcagcagtaacgtgaacttctgcagtccccaaatctcatgcggcgcatgcggctcttcc
tcctcacaatacatgaaggagtctacatcccaagatcttcccaacttatcttccactgct
ggatcttccgcctcggctcccaaagacattccagagtcctccgaagcctgtgagaagatc
aaccctctcttctcgtgctccccgtactataagaaatccatcctgagcagctctgagggc
atcttggactcggtttctcgctcaaggagagagcgaaccatctcttgttcatctgctgct
tctgatggttggggagtgtcgagcgagatcgcgcaaaaacagttttatttccgggttctt
gaagttcagcagaatgagaatgaggagaacaaaccatgcaaagagctgcatgtagaaatg
gacaagcgaatgcctttgttgtcattaaagcgacatcttgcccactttgtaggcacagct
acaagaaggtttgtcatctacaggaaatacgccagtggtcaagagaatgagatgagtcaa
ttaacagaagattttcgatcaattcctaattcgacgttgtttgttgttaaactgggtcgt
gctttacgtaaagatgaatatcgatgcaaactttatcaactgaagctttacgaggaggag
actgccaaaccattaatgaattgggtgatacaacgtgggttgacagttggtgacgcacgt
aacttgctgtgtgaagatataagtgaacaatgtgatatacatactcaaccagagagaatt
cgtattcgtaagaaaatgtggaagacaccaagccaagtttatcttgaaaacgataaattt
gggacgaacatcagtttgtacggaaccattgagtttttcattgaattccttgataaacct
gaaccaaagacagcggccaatcagcttgtgttgttgtgtcgtcgatggagaccatcttta
cttaagtttgaagattttgaggaagttgttttaaaagacgaagttgtttcatcgacttac
ttggggtggaacgcagatcatcttcgaaaacaacttgccgtagttagtgggataccaatc
gacgatatacaaatggcaaagggacgtggtatgttcccattcagaaccagtgtattagat
gctgatacaagccttgattgggttcctacatcaacaagccctcatactttctccatgcat
cttactgaggatggaactgttgtattttacagagataaaaacgaggaaataaaagagata
acagaggaagaaagaaagataatcatggacgaagagatgaaatcaaattcaaccatatcg
gcttccactaaaactaacaaagaactgaacggaccttcaacaaaaccagtttcttaccga
cgagaaaaagctttgaaaatctttattccgccttcaagaaacaaagaagttacaacagag
ctataa
DBGET
integrated database retrieval system
