Ciona intestinalis (yellow sea squirt): 100177710
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Entry
100177710 CDS
T01056
Name
(RefSeq) uncharacterized protein LOC100177710 isoform X2
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100177710
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100177710
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
100177710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
DUF5128
zf-RING_6
WLM
FG-GAP_3
zf-B_box
Motif
Other DBs
NCBI-GeneID:
100177710
NCBI-ProteinID:
XP_002119582
Ensembl:
ENSCING00000001823
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MAGAKALRNRLNDEFLTCQICLSTYTEPVLLDCQHSFCRSCVGQCLPAVSGTLHCPVCRQ
ATSLPKKFGVATLKSNFFLQSLIDAVKERRSSVSSVVTMGENEVNGNVNGVSTVRKVHDC
DNCEGENGKAVSRCLDCTDYLCRDCQLCHCQTKFTRKHKVVSLKDLRSGKYSLEIQTRAK
VFCPNHPDEICREICETCFVPACHECLHNVHSDHQKKDLKEAVAKQKERTEQLLQRSTES
QQNLMKSIEETKKQKNSVSRSSKMSVNTVQRRTKMIVDAAKMHEEKIVKGIKEMNKKRKA
SLVRIEEEGNLCSERLQSVSENLKQSADVVLVSGTPADILGLKELSDKVEHALEEYVCLR
RASSCIEATWKLSSSCESDDVTILEKMSPFFNELIGILQYGEDIADSSSHEDQAGASSVA
TSKQSLSSEPSTSSSNDQPTPISDDTGKGFRPLSIDGSNNTFTSDEDDLPPKPLYYKLNP
VQRRKRFGNNTDQPSLESPSLNLMRKFPPIEAQSSDAKAATTSQDKKSKFSLNSSKTSGQ
CCSYSRSDASGTKHKVNKWRSKSADRVLENDSGLAKAKVKPTVSTPVNHVQTTGRGRTRR
RSLPGCANPSLTLRAIQSPTGSADSLLSLTTSPVKSLAENPALLGLYETPDPTSDAAVAC
LANSIASAPPLETLNESSQNSVNHDVQAVPPTDRILIRSFTVSGKLTIFRSAPKLSVTPS
GQIVATDYKAQKLFVFCKNGSFVNSIKIKSSGSKSLHPISATSTKKNKFLVACGDAVYKF
SQGGKMTKKFGNGYFSKCCGIVTDQRNGKIIVTDIEKRCVSIHAADGGLERIFRGGASAA
ELVHSRSVMGAAGISSDHDLRLQTPYFTCVDPRNGNIIVSDWASNDVKIFDQDGGFLACI
FSCSKAQQSAPFSPGPVDTFCNPAGVCCDGQGNIFVADHGRHRVVMFDNNWQFEKFVATS
LDGIQNPWSVVVSENRQLFLSEYWSRTIKLFAY
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgcaaaggcccttaggaatagactgaacgacgagttcctgacgtgtcagata
tgtttatccacgtatacagagccagtgttgttagactgccagcattcattttgccgatca
tgtgtgggccaatgcctcccagcagtttctggcaccctgcattgcccagtatgtagacag
gcgacttctctgcctaaaaagttcggggtcgccacgctgaaaagtaacttttttctacag
agtcttatcgacgctgttaaagaaagaaggtcctctgtgtcctctgtcgtcacgatgggt
gaaaacgaagtaaacggaaacgtaaacggtgtatctactgtgagaaaagtccacgattgc
gacaactgcgaaggggaaaatggaaaagcagtttcaaggtgtcttgactgcacggattat
ttgtgtcgagattgtcaactctgtcactgccaaaccaagttcacgagaaaacataaggtt
gtcagcctcaaggatttacggtccgggaaatatagtcttgaaatacaaactcgtgcgaaa
gttttttgtccgaatcacccagacgagatctgtcgagaaatttgcgagacttgtttcgtt
ccagcttgccacgaatgccttcataatgtccatagcgatcatcagaaaaaagatctaaaa
gaagctgtagcgaaacagaaagaaagaacagagcaattgcttcagcggtcaacagaatcg
caacaaaatttgatgaaaagcattgaagaaacaaagaaacaaaagaacagcgttagcaga
tccagcaagatgtctgttaacacagtgcaacgacgcacgaagatgattgtggacgcagcg
aaaatgcacgaagaaaagatagtgaaaggtataaaagagatgaacaaaaagagaaaggct
tctctcgttcgaatagaagaagaaggcaatctgtgcagtgaacgtttgcaatcggtcagt
gaaaacctgaagcagtccgcagatgtggtgttggtgtctggaacacctgcagatatattg
ggtctaaaagagttgtcagataaagtggaacatgcacttgaagaatatgtttgcctcaga
agggcatctagttgtatcgaagcgacctggaaattgtcgtcgtcatgcgagagcgatgac
gtgacaatattggaaaaaatgagccctttctttaacgaactcatcgggatacttcaatat
ggggaagacatcgctgattcctcttcgcacgaagatcaagctggagcatcaagtgtcgca
acatccaagcaaagtttatcatcggaaccatcaacctcctcttcaaatgatcaaccaaca
ccaatatcagatgacaccggtaaaggatttcgtccgctaagtatcgatggtagtaataat
actttcacaagtgatgaagacgaccttccaccaaaacctctttattataagttaaatcca
gttcaacggaggaaacgtttcggcaacaacacagaccaaccttcacttgaatctccaagc
cttaacctgatgaggaagttcccgccaattgaagcacaaagttccgatgctaaagctgcc
accacaagccaggataaaaagtccaagttttctttaaattcttccaaaacgagcggccag
tgttgttcctacagtaggtctgacgcatccggcacaaaacataaagtaaacaagtggagg
agtaaaagtgccgatcgtgttctggaaaacgattctgggcttgccaaagcgaaagttaag
ccaacagtgagcacacctgtcaatcatgtccaaacaactggcaggggaagaacaagacga
cgtagccttcctggatgcgcgaatccatctctcacattacgtgcaattcagtcgccaact
ggaagcgctgactccttactttcgctaactacttcgcctgtcaaatcgttagcagaaaac
ccagcgttattaggcttgtatgaaacaccagacccaacttcggacgctgctgttgcgtgc
ttagctaacagcatagcatcggcacctccgcttgaaactttgaacgaatcatcacagaat
tcagtcaaccatgatgtacaagctgtcccaccaaccgatagaatcctcattcgttcgttc
acagtgtctggaaaacttacgatatttcgttcagctccgaagttgtcagttacaccatct
ggacaaattgttgcaactgattacaaagcacaaaagcttttcgtgttttgtaaaaatggg
tctttcgtgaactcgataaaaattaaatcaagtggttcaaaatccctacacccaattagt
gcgacatcgacgaaaaagaacaagtttttggtcgcatgcggtgacgctgtttataaattc
agtcaaggtggaaaaatgacaaagaaatttggcaatggttacttttctaaatgctgtgga
attgtgacggaccagagaaacgggaaaattatcgtcactgatattgaaaagagatgtgtt
tcaattcacgccgcggacggaggtctcgaacgaatattcagaggcggtgcttcagcagcc
gagcttgtccattctagaagtgtaatgggggcagccggaataagcagcgatcacgacttg
aggctgcagacgccttactttacgtgtgtggatccgagaaatgggaatattattgtgtcc
gattgggctagcaatgacgttaagatttttgaccaagatggcggatttctggcttgtata
ttttcttgttctaaagcccagcagtcggctcccttctctcctggcccagtggacacattc
tgcaacccagctggcgtatgttgcgatgggcaggggaacatatttgtggctgatcatggg
cgacaccgtgtggtcatgttcgacaacaactggcaatttgaaaaattcgttgcaactagt
ttggacggaatacaaaatccctggtctgttgttgttagcgaaaatcggcagttatttctg
tcagaatactggagtaggacaatcaaactttttgcgtattaa
DBGET
integrated database retrieval system
