Ciona intestinalis (yellow sea squirt): 100178584
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Entry
100178584 CDS
T01056
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100178584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100178584
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100178584
Spliceosome [BR:
cin03041
]
Complex A
U2 snRNP components
U2 related factors
100178584
Complex B
100178584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Ima1_N
Motif
Other DBs
NCBI-GeneID:
100178584
NCBI-ProteinID:
XP_002130991
Ensembl:
ENSCING00000006813
LinkDB
All DBs
Position
2:complement(6812625..6826526)
Genome browser
AA seq
1150 aa
AA seq
DB search
MENGVPAEKPPGTAVEQASAEENGKPTEEKTKVRKDESKSRKRHRSRSRSRKRSRSKGRR
SRSRNRSPRRKKSPSHKRRRSRERRSGSRDRRRKRSKERRSRRSRSKNKKRGRSESSSGS
DSSDAKTTTVKPSSETTTTESTATTTTVNNGNIKVKDVKTSDSTTKVKTEKRKAERNERE
KESRDKKDRRRSRSPERRRRSRSPHRRRRRSRSRERHRSRDRSRRSRSRRRSRSRGKDGK
SKSGNDKDGRKTASKFSDVNPLSQDFEQAKLEDEMKKRRERVEKWRSEQKSSNTGDGNDE
DDENKPRKIWSLEDDDDDEELDGDNENKMDAGDAEDQKMDVEKKKVEEEEEEVDPLDAFM
MDLTQNKNDTNKSEKDGPQVSRITSVASKSNKGKVKGELMEGNMDAMEYSSEEEEESLDS
AFSKFQTNRQQPKKLETTIDHSKIPYENFRKNFYVEVPELAALTTEQVEAMRFDMENIKI
RGKSCPKPIQSWVQAGVSYKMLNALKKANYEKPTVIQAQAIPAIMSGHDLIGIAKTGSGK
TVAFLLPMLRQIMDQRPLEDTEGPIAVIMTPTRELALQITKECKKFTKSLKLHVVCVYGG
TGISEQIAELKRGAEIIVCTPGRMIDMLTVNNGRVTNLRRCTYLVLDEADRMFDMGFEPQ
VMHVINSCRPDRQTVLFSATFPRQMEALARRILNKPVEVQVGGRSVVCSDVKQQVLILTE
EQKFLKLLELLGQYQEKGAVLVFVDKQERADYLLKELMDKSYSCMALHGGIDQYDRDSII
SDFKRGVNQLLIATSVAARGLDVKNLILVVNFNCPNHYEDYVHRCGRTGRAGNKGFAYTF
ITQDQARYAGEIIKALELSLTKVPPDLEMLWNQFKEEQKAQGKSVKSNSGFTGRGFKFDE
TEYVIAKERKQIQKAALGLQDSDDDEAAEDIDEQIESMFNSKKIVKDVLGSISNATTAPG
AGVNANKAKLDVAKRLASKINMQRNLGAGAQDVMQQAATALMKGGVFTGPKVSAKTIAEQ
MAEKINLKLNYVPQEKPDEEEDESKNSLKRYEEELEINDFPQTCRWKVTSKDTLVQISEY
SEAGITIRGQYFPKGKQPGEEDRKLYLAIEAVSELAVQKAKNEVTRLIKEELIRLQNSYQ
PVNKSRYKVL
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatggagtgcctgctgagaaaccaccagggactgctgtggaacaggcatctgct
gaggaaaatggaaaacccactgaagaaaaaacgaaagtaaggaaagatgaatcaaaatct
cgtaaaagacatcgatcacgatcaagaagtcgtaaacgatcgagatcaaaaggacgaaga
tcaagatctcgcaacagatcaccgaggcgcaaaaaaagtccttcacataaacgaagacga
tcaagagaaagaagatcgggttcaagagacagaagaagaaaaagatcaaaagaacgaaga
tcacgtcgttccagaagtaaaaacaaaaaaagaggaagaagtgaaagttcttctggtagt
gacagctctgatgctaaaaccacaacagttaaaccaagcagtgaaactacaacaacagaa
tccactgcaacaactactactgtaaataatggaaatattaaagtgaaagacgttaaaacc
agtgattcaactacgaaagtaaaaacagaaaagaggaaagctgaaagaaatgaaagagag
aaggaatcgagagataaaaaagacagaagaagatcacgatcaccagaaagaagaagaaga
tctcgttctcctcatagaagaagaaggaggtcgcgctcacgtgaaagacatcgatcacgt
gacagatcacgccgctcacgatcacgaagaagatctcgttctcgtggtaaagatggaaaa
tcaaaaagtggaaatgataaagatggaagaaaaaccgcatccaagtttagtgatgtcaac
ccgttatcgcaagacttcgagcaagcgaagttggaagatgagatgaagaagcgaagggag
agagttgaaaagtggaggtcggagcaaaagtcctccaatactggagatgggaacgatgag
gatgatgagaataaaccgagaaaaatttggtcgcttgaagatgacgacgatgatgaagaa
ttagatggagataatgagaacaaaatggatgcaggagatgctgaagatcagaagatggat
gttgagaagaagaaagttgaagaagaagaagaagaagttgaccctcttgatgcttttatg
atggatttgacacaaaacaaaaacgacacaaataaatctgaaaaagatggtccccaggta
agcagaataacttctgttgcctcaaaatccaacaaagggaaagttaaaggggaattaatg
gaaggaaatatggatgcaatggaatattcatctgaagaagaagaagagtcgctcgattca
gctttcagtaaattccaaaccaaccgacaacaaccaaagaagttggaaaccacaatcgat
cattcaaagattccgtacgaaaattttcgcaagaatttttatgttgaggttccagagctt
gctgctttaaccacagagcaagttgaggcgatgaggtttgacatggaaaacattaaaatt
cgaggaaaaagttgtccaaagcccatacagtcatgggtacaagctggcgtttcatacaag
atgttaaatgcgctgaaaaaagcaaattatgagaagccgaccgtgattcaagcacaagca
ataccagctattatgtccgggcatgacttgataggaatagcaaagactgggagtggaaag
acagttgcgttcttgctgccgatgcttcggcaaattatggatcaacgacctcttgaagat
acagaaggacctattgctgtaattatgactccaactcgagagcttgcgctacaaatcacc
aaggaatgcaagaaattcacaaaatctcttaaacttcatgttgtttgtgtgtatggggga
actggaatttcagagcagattgctgagttgaagagaggagccgagataatagtttgtaca
ccaggaagaatgatcgatatgttgactgtgaataacggtcgcgttacaaacctgagaaga
tgtacataccttgtacttgatgaagcggaccgtatgtttgatatggggtttgaaccgcag
gtgatgcacgtgatcaactcttgtcgaccggaccgacaaacagttcttttttcagcgaca
tttcctcgccagatggaggcgctagcgagacgtatattgaacaaaccagtcgaggtacaa
gttggaggaaggagcgtggtttgttcggatgtcaagcaacaagtgttgattttgacagag
gaacaaaaattcttgaaacttcttgagttgcttggtcaataccaggagaaaggagcagtc
ttggtatttgttgataaacaggaacgagcagattatcttctaaaggagttaatggacaaa
agttattcatgcatggctttgcatggaggtattgatcaatacgaccgagattcgattatc
agcgatttcaagagaggagtaaaccaactgttaattgcgacatctgttgccgcgagaggt
ctcgacgttaaaaatctaattcttgtcgtaaacttcaactgccccaatcattatgaggat
tatgtgcacagatgtggaagaactggacgggcagggaataagggctttgcatacaccttt
atcactcaagatcaagctagatacgccggtgaaattatcaaagctctcgaactcagctta
accaaagtgcctcctgatcttgaaatgttatggaaccaatttaaagaggaacaaaaagcg
caaggaaagtcagtaaaatccaacagtggtttcactggacggggtttcaaatttgacgaa
acagaatatgtgattgctaaagaaagaaaacaaatccagaaagctgcgttgggattgcag
gactcagatgatgatgaggcggcggaagatattgatgagcaaatagaatccatgttcaat
agcaagaagattgtgaaagatgtcctcggctctatcagcaacgcaactactgctcctggt
gctggggttaatgcaaataaagccaagttagatgttgccaagcgacttgcatctaagatt
aacatgcagaggaacctgggggctggggctcaggatgttatgcaacaagcagccaccgca
ttaatgaaaggtggcgtcttcactggacccaaagtttcagccaaaaccatcgcagaacaa
atggccgagaaaatcaacttgaagctcaactatgtaccacaggagaaaccagatgaggag
gaagacgaatcaaagaactcgctcaagcgttacgaggaagaattagaaattaacgacttc
cctcagacatgcagatggaaggttacctcgaaggacactctcgttcaaatcagtgaatat
agtgaagcaggaattaccattagggggcagtatttcccgaaaggaaagcaaccgggtgaa
gaagatcggaaactttatctcgctatcgaagcggtttctgagcttgctgtacaaaaagca
aagaatgaagtgacccggttgattaaagaggagcttatccgactccaaaattcttaccaa
ccggtcaacaagagcagatacaaagttttgtga
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integrated database retrieval system
