Ciona intestinalis (yellow sea squirt): 100179776
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Entry
100179776 CDS
T01056
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3-like isoform X1
KO
K04955
hyperpolarization activated cyclic nucleotide-gated potassium channel 2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cin04040
]
100179776
Ion channels [BR:
cin04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
100179776
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Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_N
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
100179776
NCBI-ProteinID:
XP_004226550
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Position
10:2377756..2394199
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AA seq
826 aa
AA seq
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MPLRKKKRVSALQALAMYSGGSMSVPVTKFSLRMYGSQKAVEQEQKRQESAGSFVIHPYS
NFRFYWDFFTLILLLISMIIIPVAITFFNDEMRTDSGWIAFNLCLDFWFLSDIIMNFHTG
IIVEYGDGDVVLDLPTIRSRYLRSWFVIDLISTLPVDYLLQLTSGSSASASASRAMKLVR
FAKIISLLRLLRISRLIRYVHQWEHIVGMQYDLAVAAVRIFNLVCLMLLIGHWNGCLQFL
IPMLHNYPADSWIVIDKLVGKPWAEQYSWSMFKAMSHMLCIGYGQQPPKNLMDLWMTMLS
MVSGAVCFAMFIGHATALIQSMDSSKRQYKEKYMQVKEYMRFRRLPKTLRSKVYEYYENR
FQGKMFDENGILSELSTNLREEVVNFNCRHLVASVPFFSNAESDFVTEVVQKLKYEVFQP
KDVIVREGEIGKKMYFIQHGLVEVKNSHRSEPIKQLSDGSYFGEICLLINDRRVASVEAV
SYCSTYSLHVNDFNYLLSEHPVMRKTLERVAAARLSSLGRHNPVLEEKVKESTNGYSKSN
EIAEEIVRHDTQLLTEKAAYLGSSCNRLNFRERTSSNASCNRLSVRERASHCNESPSRRI
KTSVSLGTDMSHFASGLFPSSSKRQRHRTANKEEEITDIEMTNDIEKCDDILEVTCKEPE
SPRSKSPRPFRKPKFLQNLTLQRSKLYESTIKGKDSVIESFLNNVTRPRSKQQCLSSNGC
SSPHISTARRSAATEERSFVEPTITIVNVEQSNDENDNCDANGTSHNKKIVLSKADVQCT
DPLNNVLKLPDLNNTPKQSDNKTCLLGERCPKDIESRCEHMIDEII
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgccgctacgaaaaaagaaacgagtttcagctctgcaggcgctcgcaatgtattccggg
ggatccatgtctgtaccggtgaccaagttttccttgcgaatgtacggcagtcaaaaggcg
gtcgagcaggaacaaaaacgacaggagagcgctggttcattcgtcatacatccgtactca
aacttcaggttctattgggatttctttaccttaattctgctgcttattagtatgattatt
atcccggtggcaatcacgttctttaacgacgagatgcgaacggattccgggtggattgcg
tttaacctttgcctggatttctggtttttaagtgatattataatgaacttccatactggt
attattgtggaatatggagacggagacgtcgttttagatctgcccacaattagaagccgt
taccttcgatcctggttcgttatcgatctcatttcgacgctgcccgtcgattacctgcta
cagttaactagcggatcgtcagccagtgcaagcgcatccagagcgatgaaacttgttcgg
tttgcgaagatcattagcttgctacggttgctaagaatttcacgtttaattagatacgtg
caccaatgggaacatatcgtgggtatgcagtacgacttagcagtcgcagctgtgcggatt
ttcaaccttgtatgcttaatgttgctgatcggtcattggaatgggtgtctccagttcctg
ataccaatgcttcataattatcctgctgattcctggatcgttatcgacaagttagtggga
aagccatgggccgagcaatactcgtggagcatgttcaaagcaatgtcacacatgttgtgt
atagggtacggccaacaaccacccaagaacttgatggatttgtggatgacgatgctctca
atggtttctggtgctgtatgtttcgccatgttcattggtcatgccacggcattaatacag
tctatggattcatccaagcgacaatacaaggaaaagtacatgcaagtgaaggaatacatg
cggttcagaaggcttccgaaaacgttgcggtcaaaggtgtatgaatattacgaaaaccgg
ttccaaggcaaaatgttcgacgagaacggaatactcagtgaactctcaactaatttacga
gaggaagttgttaactttaactgtcgccatctagtagcttcagttccattctttagcaac
gcggaatccgattttgtaaccgaagtcgttcagaagctcaagtacgaggtgtttcaaccg
aaagatgtgattgtcagagaaggcgagatcggaaagaagatgtatttcattcaacatggt
cttgtggaagtgaagaacagccatagatctgaaccaattaaacaattatcagatggatcc
tactttggggaaatatgtctgctgataaatgatagaagagtcgcatctgttgaagctgtt
agctactgttccacctactccctgcacgtcaatgattttaattatttgctgagcgaacat
ccagttatgaggaaaacactagaaagagttgcagccgctcgcctttccagtttaggtcgc
cacaacccagtattggaggaaaaagtaaaagaatcgaccaacggctactcgaagtcaaac
gaaatcgccgaagagatcgtgcgccatgacacacaacttctaaccgaaaaagcggcttat
cttggttcaagctgcaatagactcaactttcgggaaagaacttcgagcaatgctagttgt
aacaggcttagcgtgcgagaacgagcatctcattgcaatgaatccccttcacgcaggata
aaaacaagtgtgtctttgggaactgacatgtctcactttgcgtccggattattcccaagc
tccagcaagaggcagagacatagaacggccaacaaagaagaagaaatcactgatatagaa
atgacgaacgatatcgaaaagtgcgatgacattttagaagtaacttgcaaagaaccggaa
tcgccaagatcaaaatctccacggccgtttcgaaaaccgaagtttctgcaaaatttgacc
ttgcagaggtcaaagttgtacgaaagtacaataaagggcaaagacagcgtgatagaatcg
ttcctcaacaatgttacgaggcccagaagcaagcagcagtgtctctcatctaacggttgc
tcttccccgcatatttcaaccgctagacgaagtgctgcgaccgaggaaagaagttttgtc
gagccgaccatcacaattgtgaatgtcgaacagtcaaacgatgaaaatgacaactgcgac
gcaaacggcacaagtcataataagaaaattgttttgtcaaaagccgatgtacaatgcact
gaccccctgaacaacgtattaaaattacctgatttaaataacacacccaaacaaagcgac
aacaaaacttgcttgttgggagaacgctgcccaaaagatattgaatcaagatgcgaacat
atgatcgatgaaattatctag
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