Ciona intestinalis (yellow sea squirt): 100183917
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Entry
100183917 CDS
T01056
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cin03016
]
100183917
Enzymes [BR:
cin01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
100183917
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
100183917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
Myc_N
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
100183917
NCBI-ProteinID:
XP_002124600
Ensembl:
ENSCING00000004125
LinkDB
All DBs
Position
Unknown
AA seq
675 aa
AA seq
DB search
MTVVELILSAIVFVITHMIIKFLKTRNTTPDITKIKPVANGRTPVLQEVVKTKKVVHILF
GTQTGKAAKFAHLVKDELLVKGVECEVEDLKNFDPEDNFLNWKERKENGPVLFLVSTYTD
GVPPLTCKWFCQWLHEASNDFRVNKSILAGMKYAVFGLGNSLYSDNYNTVGRNIDKWLHK
LSASRVFPFTEGDENVAQSKQGSLKLDFDSWKNDIISILVYLLNESDDKDASSTPHFAED
SESESEDVENSESEEDKEEDDVVDVEDVGKAMSKYPLHTKSNNVNGVLVKRKSTKAKREM
ITPELSKSLTKQGYRLVGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLA
CANKCVFCWRHHSNPVGTEWKWKMDSPDIVVKGAVNNHYDMIKQFKGVPGVKPERFAEGF
SIKHCALSLVGEPIMYPEINKFVQLLHEKGISSFLVTNAQFPEAITNLIPVTQLYVSVDA
ATQESLKKIDRPLFKDFWPRFIKSLKALSAKGQRTVYRLTIVKAWNSDEIEAYANLVSLG
KPDFIEVKGVTFCGDSKSSDGLTLKNVPWHEEVVNFVDQLAQMLDGYEIASEHEHSNCVL
LAQTKFKISDGGWNTWIDYSRFHELYQRYQATGECFTALDYMKKTPPWALFGAKERGFDP
VETRWRRKEKVTQGC
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacggtagtggaactaattctatcggcaatcgtatttgtaatcactcacatgataata
aagtttcttaaaacaaggaatacaactccagatataacaaagataaaacctgtcgcaaac
ggaagaacacctgttctgcaagaggttgtgaaaacaaaaaaagttgttcatattttattt
ggaacccaaactggaaaagcggcaaagtttgctcatctggttaaagatgaattattggtg
aaaggagtagaatgcgaagttgaagatttaaaaaactttgatccagaagacaatttccta
aattggaaggaaagaaaggaaaatgggccagttttgtttctagtttcaacctacactgat
ggtgtaccaccactaacatgtaaatggttttgtcagtggttacatgaagcatccaatgac
tttagagttaacaaatcaattcttgctggaatgaagtatgctgtgtttggtcttggcaat
tctctctattctgataattataatacagttggccggaatatagataagtggttacacaaa
ttgagtgcatcccgtgtcttcccattcactgaaggtgatgaaaatgttgcacaaagcaag
caagggagtcttaagctagattttgattcctggaagaatgatataattagtatattggta
tatttgttaaatgaaagtgatgacaaagatgcttcaagcactcctcactttgccgaagat
tcagaaagtgaaagtgaggatgttgagaacagtgaaagtgaagaagataaagaagaagat
gatgttgttgatgtcgaagatgttggaaaagcgatgtcaaaatatcctcttcatacaaag
tcaaacaatgttaatggggttttggtaaaaaggaaatcaacaaaagcaaaaagagaaatg
ataacacctgaactatctaaatcacttacaaaacaaggttatcgacttgttggttcacat
tctggagttaaattatgtcgttggacaaaatcaatgttgcgtggacgtggaggatgttat
aaacatactttctatggaattgaaagccacaggtgcatggagacaacaccaagtttagct
tgtgcaaacaaatgtgttttctgttggcggcatcattccaaccctgtgggaacagaatgg
aaatggaaaatggattcaccggatattgttgtgaaaggagcagtgaataatcattatgat
atgatcaaacaatttaaaggagtacctggtgttaaacctgagagatttgctgaaggattt
tccataaagcattgcgctctctcattggttggagaacctatcatgtacccagagatcaat
aaatttgttcaacttttacatgaaaagggcatatcgtcattcttggtgaccaacgcacaa
tttcctgaagctatcaccaacttaatacctgtcactcaactttatgtcagtgttgatgca
gcaacacaagaatcacttaagaaaattgatcgtcccttgtttaaagatttctggcccaga
tttataaaaagtttaaaagctttatctgctaaaggtcaacgaactgtttatagactgaca
atagttaaagcatggaacagtgatgagattgaagcttatgctaaccttgtttctcttgga
aaacctgattttattgaagttaaaggtgttacattttgtggagacagtaaatcaagtgat
ggattgactttgaagaatgtaccttggcatgaagaagttgttaattttgttgatcaactt
gcacaaatgttagatggatatgaaatagcaagtgagcatgaacattcaaactgtgtgcta
cttgcccaaaccaagtttaaaatatcagacggtgggtggaacacttggatcgattattca
cgttttcatgaattataccaacgctaccaagcgactggggaatgttttactgctcttgat
tacatgaagaaaactcctccatgggctttgtttggtgcaaaggaaagggggtttgatcca
gttgaaactagatggagacgtaaagagaaagtcacccaaggttgttaa
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