Ciona intestinalis (yellow sea squirt): 100187369
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Entry
100187369 CDS
T01056
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
cin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100187369
09124 Replication and repair
03420 Nucleotide excision repair
100187369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100187369
03400 DNA repair and recombination proteins [BR:
cin03400
]
100187369
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100187369
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100187369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
100187369
NCBI-ProteinID:
XP_009860684
Ensembl:
ENSCING00000021226
LinkDB
All DBs
Position
13:1226432..1234389
Genome browser
AA seq
463 aa
AA seq
DB search
MERLQTVKLKRLGLHEYLCSLPPAILDSLYEHPATCMAVFRELPELAKYYIMRILFVEQP
ISKAAVSAWVKVNAKQDHNEAVKSMCSLRVWMESNLQGSASTAFIMSSIFRRNLQKALVG
GGEPWSSTAHLGPDKHGKDIESLDKYASERWEMLLHYLVGSETNSTISQDIKDLINQAGL
MKQGSEGGRSYSIITAKGFQFLLLDNASQVWYFVLEYLDWVRERGMNLVPILRFIFELSF
SSPGKDLPTDGRDDHVLICLQHFREMGLVMQRKRKSRRFYPTYLAINLANRANASVTNVT
NSRGFILAETNFRVYAYTDSELQYSILSLFCKMLYRFPNVCVLQLTRKSIQSAVVNGITA
DQILHYIKANAHPDMLKNDPIIAPTLADQVRLWAMERDRLTYRDGVLYNQFLAQKDFEVL
RNYAKELGALIWENSSKRYMVVTKDGHDQVKRYWKKYKKESDT
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggagagattgcaaacggtgaagttaaaacggttaggtttgcatgaatacctatgcagt
ttaccacctgcaatactggactcattatatgaacaccctgcaacttgtatggctgtattt
agggagctcccagagctagccaagtattatattatgcgaatattgttcgtggaacaacct
atatctaaagctgctgtgtctgcttgggtgaaagttaatgctaagcaagaccacaatgaa
gctgtgaaatccatgtgcagcttacgggtttggatggagagtaatctacaaggttcagct
tcaactgccttcattatgagctcaatatttagaagaaatctacaaaaagcacttgttggc
ggtggggagccatggtcaagcaccgcacaccttggtcctgataaacatggtaaagacatt
gaaagcttggataaatacgcaagtgaaagatgggagatgttattgcattacttagttgga
tcagaaacgaactcaaccataagccaagacatcaaagacctgattaaccaagctggcttg
atgaagcaaggcagtgaaggggggagatcatattccatcattactgctaagggattccaa
tttctattgttggataacgcatcacaagtttggtattttgtccttgaatatttggactgg
gttcgagagcgaggaatgaacttggttccaatccttcgatttatctttgaacttagtttc
tcttcacctggaaaggacctaccaactgacgggagagatgaccatgttctcatatgcctc
caacatttcagggagatgggacttgtaatgcaaagaaagagaaagtcgcgccgtttctac
cccacttaccttgctattaacttggcaaaccgggcaaatgcgtcggttacgaacgtgacg
aacagtcggggctttattttggctgaaactaactttagagtctatgcttatacagattca
gaactgcagtattccatcttgtctctattttgtaaaatgttgtatcgtttcccgaacgta
tgtgttctacaactgacgcgtaaaagtatccaatcagctgttgtgaacggaataactgcc
gaccagatcctacattatattaaagctaatgcgcatcctgatatgctcaaaaatgaccct
attatagctcccacccttgcggaccaggttcgactatgggccatggaaagagataggttg
acatatagagatggtgtcctgtataaccagtttcttgcacagaaagattttgaagtttta
agaaactatgcaaaggaacttggcgccttaatttgggaaaactcatccaaaagatacatg
gtggttacaaaggatgggcatgaccaagtaaagagatattggaaaaaatataaaaaagaa
tcagacacttga
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