Ciona intestinalis (yellow sea squirt): 104265829
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Entry
104265829 CDS
T01056
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104265829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
104265829
03009 Ribosome biogenesis [BR:
cin03009
]
104265829
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104265829
Spliceosome [BR:
cin03041
]
Complex A
U1 snRNP components
U1 related factors
104265829
Complex B
104265829
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Helicases
104265829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
104265829
NCBI-ProteinID:
XP_009859024
UniProt:
F6T0K4
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All DBs
Position
7:4612282..4618173
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AA seq
573 aa
AA seq
DB search
MKGVRTLLTFSLRANRTFQLPLNRRVSFRPQHILSNTRPILAPTQTRLSSAHPYNAQHDE
DGLDFDSLFKDIDPVFEEHRGNERNERSYAANFNFSTADFSQNEDFERDFYSEHPDCANR
SQSDIDAFYRTNGITIGGEKVPRPVLDFSELQFSDHIDSKLRQSNFNVPTAIQSTGWPAT
LSGRDVIGIAQTGSGKTLSFILPALIHIQAQRPLGRGEGPIALVMCPTRELAVQCERVAN
QFAGPFIRTACAYGGSSRNIQLDKIGAGCSILVATPGRLMDFLQHGEVNLRRCTYLVLDE
ADRMLDMGFEPQIRKIIEQIRPDRQVTMWSATWPSEIRQLAKDFISTKSATHIKVGSSDL
QASENIQQKFAICHSPDKFKQFKEIIIELKNANKDQFSQFPKTLVFCNTKATCDRLSQQL
RNAGLRSNAIHGDKTQSQRDSVLNNFRRGRSNILIATDVAARGLDINDIQYVINFDTPPT
CTDYIHRIGRTGRAGKQGTSYTLLTEENGAIVKDLISSLEVINHEVDPKLHKMQQWWIQN
RTKAKPRQRPQTRRFKNDHYNNRRNRHYDDGYY
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtgtacgaactttgttaactttctcgttgcgagcgaatcgcaccttccaactt
cccctgaacagaagagtctcatttcgcccccaacacatattatcaaacacaagacccatc
ctggcacccacacaaacaaggttgagttcagcccacccttataatgcacaacatgatgag
gatggcctcgactttgactccctatttaaagacatagatccagtgtttgaggaacacaga
ggaaatgaacgaaatgaaagaagttacgctgcaaactttaacttctcaaccgccgacttt
tcgcaaaatgaagattttgagcgagatttttacagcgagcatccagattgtgccaacaga
tctcagagcgacattgatgcattttatcgaacaaatggaataactattggaggagaaaaa
gttccaaggccggttcttgatttttccgaactgcaattttcagaccacattgattccaag
ttacgtcaatctaattttaatgttccgaccgccatccaatcaactggttggccggcaact
ttatctggtcgtgatgttatcggtatcgcacaaactggttccggaaaaacactttcgttt
attcttcctgccttaatccacatacaagctcaacgaccacttggaagaggggaaggccct
attgcacttgtgatgtgtcctacccgtgaactggctgttcagtgtgaacgggtagccaac
caatttgctggaccttttatcaggactgcatgtgcttatgggggaagtagtaggaatata
cagctggataaaatcggagcaggttgttccatcttggttgccaccccaggaaggctgatg
gatttcttacaacatggagaagttaacttaaggaggtgcacgtaccttgtgttggacgaa
gctgaccgtatgttggacatgggcttcgaaccacagataaggaaaataattgaacagatt
cgacctgaccgtcaagtaacaatgtggagtgccacctggccctcagagatccgtcagctt
gccaaagatttcatttccacgaaaagtgcgacgcacatcaaagttggatcctcggatctt
caagcaagcgaaaatattcagcagaaatttgccatctgccattcacctgataaatttaaa
cagtttaaagaaataatcattgaattgaaaaacgcaaacaaagatcaattttcacaattc
ccgaaaacccttgtgttttgtaacaccaaagctacatgtgatagactgtcacagcaattg
cgcaacgcaggtttaagatccaatgctatacatggagataaaacgcaatcacaacgtgac
agtgtgttgaacaatttccgtcgcggcagaagtaacattctgatcgcaactgatgttgca
gctcgtggattagacattaacgacatccagtacgtgataaacttcgacactccacccact
tgtacggattatatacataggattgggagaacgggacgtgcagggaaacaagggacatca
tataccttgctgactgaggaaaatggtgccattgtaaaagatcttatctccagtcttgaa
gtaattaaccatgaagtggaccccaaactacacaagatgcagcaatggtggatacagaat
cgaacaaaagcaaaacctcgtcagagaccacagaccaggagatttaagaacgatcattac
aacaacaggagaaatcgacattatgatgatggctactactga
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