Ciona intestinalis (yellow sea squirt): 445636
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Entry
445636 CDS
T01056
Symbol
hh1
Name
(RefSeq) hedgehog homolog 1
KO
K11988
sonic hedgehog
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cin01002
]
445636 (hh1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cin00536
]
445636 (hh1)
Peptidases and inhibitors [BR:
cin01002
]
Cysteine peptidases
Family C46: hedgehog family
445636 (hh1)
Glycosaminoglycan binding proteins [BR:
cin00536
]
Heparan sulfate / Heparin
Morphogens
445636 (hh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Motif
Other DBs
NCBI-GeneID:
445636
NCBI-ProteinID:
NP_001027634
Ensembl:
ENSCING00000006761
UniProt:
Q8MY57
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All DBs
Position
8:complement(1633951..1643085)
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AA seq
557 aa
AA seq
DB search
MLEDLDSVQARLSPDNVNSTQDCCNENGSRTPAASCNQTVLQRFTNLICTCNLRRRQLQR
LCFSTRKHKSHRSGAGYCTLLPTCASIRVHIAGFLAWTLLVAPLLSGIAMDTRLLRRRSS
LGGVSMCGACRPGHGSGGSRMPGRELVPFLKGEYVPKMSEQTIGASGPVTGRIRADTPRF
RQELVPNWNTDIEFRDEEESNEDRFMTPICRARLDYLAILVANQWARVKLKVLEAWDDGN
DKANDPLHYEGRAVDITTDDADRNKYPILARLAVVAGFDWVKYDGKVVHCSVKSEESDAA
KYGGCFPGESTVIVPGEGHVPMSSLQPGDQVLAIDKSGAVITDTFLSFMDARSDIVSGHQ
AYRQMVEITTENGFSVTLTRNHLIYVSKPTYDASLLTATSNATQQNNERLGLQDFTSPHS
SFAAKVRQGDYIYTLPNSHTGPDTPSATVRPSRVVSVRTIETASGAYAPLTYSGTIIVGG
TAASCYAVIESDVIAHTVVSPFRYYHWLSLWFNGDSKDHRNCTHVGPVRPTDGISLYSKL
LHQIFSKVLPSWFFWAE
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgctagaagatctggattctgttcaagctcgtctttcaccggacaatgtcaactcaacg
caagactgctgtaacgaaaatggcagcagaacccccgctgcttcgtgcaatcaaactgta
ctccaacgcttcacgaacttgatctgtacatgcaacctacggcgacgtcagctgcagcgg
ctctgcttctcaacccgcaaacataaatcgcatcggtcaggtgctggctactgtaccttg
ctaccgacctgcgcctccatacgagtccacattgcaggcttcctggcgtggacgctgctc
gtagcccctttgctcagcggcatagccatggacacaagactgcttaggcgccgatcaagc
ctgggcggggtgtcgatgtgtggcgcgtgccgacccgggcacggaagcggcggctctcgg
atgccgggtcgggagcttgtgccgttcttgaaaggtgaatacgtgccgaaaatgtccgag
cagacgatcggggcaagcgggccggtcaccgggcgcattagagctgatactccccgattt
cgacaagagctggtgccgaattggaacacagatatcgagttccgggacgaggaagaaagc
aatgaggatcgcttcatgaccccgatatgcagagctagactggactaccttgcaatcctc
gtagcgaaccaatgggcgcgtgtcaaactgaaagttctcgaagcatgggacgatgggaac
gataaagccaacgaccctttgcattatgaaggtcgagcggttgatataacgactgatgat
gcagacagaaataaatatccgattcttgctcggcttgcagttgtggcagggttcgattgg
gtaaaatatgacggaaaggtcgtccactgctccgtcaagtctgaggaatcggacgcagcg
aaatatggaggatgctttcctggtgagtcgaccgtgatcgttcctggtgaaggacatgtc
ccaatgtccagcctacaacctggagaccaagtgcttgctatagacaagagcggtgcagtc
atcactgacactttcctctcgtttatggatgcacgaagtgatatcgtttcaggacaccaa
gcttatcgccaaatggtagagatcacaacagagaatggcttctctgttacattgacacga
aatcacttgatatacgtatctaagccaacatatgacgcttccctgttgactgcaacatca
aatgcaacacagcaaaacaacgaacgactcggtctccaagatttcacttcaccgcattcc
agctttgctgccaaagtacgccagggcgactacatctacacactccccaattcgcatact
ggtcccgacacccctagcgccaccgtacggccgtctcgtgttgtgagcgtacgaaccatt
gaaactgcaagtggagcatatgccccacttacatacagtggtaccatcatagtaggtgga
acagcagcgtcatgttacgccgtcatcgaaagtgacgtcatagcgcacacggtggtttcc
ccgtttcgttactaccattggttaagcttatggtttaacggtgacagcaaagaccaccga
aactgtacacacgtcggaccagtgcggccgaccgatggcatatcgttatattctaagtta
ttgcaccagattttttcaaaggttttgcccagttggtttttctgggcggagtag
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