Ciona intestinalis (yellow sea squirt): 445745
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Entry
445745 CDS
T01056
Symbol
soxC
Name
(RefSeq) HMG transcription factor SoxC
KO
K23581
transcription factor SOX4 (SOX group C)
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
445745 (soxC)
Transcription factors [BR:
cin03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
445745 (soxC)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
445745
NCBI-ProteinID:
NP_001122334
Ensembl:
ENSCING00000007901
UniProt:
Q4H2S1
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All DBs
Position
7:2394903..2414156
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AA seq
525 aa
AA seq
DB search
MASTSRLTKISAELMSLHAGQNLDGNPGSPESGLGSDWDFDSDEIVQSSSVATPRRSIDA
LHASSPSPTLECILDCPDVSGVDVFDSPIKKEADFKDPKPRQSPNKNKRENILNELKNLP
ATKIKLPPPSRSSQKKLAARPGYIKRPMNAFMIWSQIERRKIMEKTPELHNAEISRNLGR
IWREQADSIKRPFLIEAERLRLQHMCDYPDYKYKPKKKAKGKKCDSSENSTFSYLHNDPD
QSMEIIETNTEALKAEVKVSSKRLPKKRKLSQSKPSLPEIKPTVVASINPIQNNSGNSEP
QAKEVTATTNNLLTAVKVEPRVPPLPITPATIVTAVPSKRGRFEVHTPSPCDTNQRIGLV
HGTVFKTVTEGNRQFIIVSGANDVISDVTNSSLVSTQRTSTPCQQKQIINANFVPITNDC
GQEKVYNIVRGCIQVASQEPTNSTTQKRVEPDVPTTFANMGDDFRNEYLKEDHFIDQITL
SSGIAYADPCRRKSHFEFSDYDTDEVKRMIESSDLAWLRDDICCP
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtacatcaagacttacaaagatttcggccgaactcatgagcttgcacgccggc
caaaatttggacggcaacccgggctcgccagagtcgggcttgggctcagactgggacttt
gacagcgatgaaatcgtgcaatccagttctgtagctacaccaagaaggtcaatagacgcc
ctacatgcttcatctccctctccaacattggaatgtatcctagattgccctgatgttagc
ggagtagacgtgtttgacagtccgatcaaaaaagaggctgactttaaagacccgaaaccc
agacagtcgccgaacaagaacaagagggaaaacatattgaacgagttgaaaaacctaccc
gctacaaagatcaaattgcctccgccgtcgcgaagcagtcaaaagaaactggcggcgagg
cctggctacatcaagcgcccaatgaatgcgttcatgatatggtcgcaaatcgaacggaga
aagataatggagaaaactccagagctacacaatgctgaaatcagccgcaatctaggtcga
atctggagggagcaggcggattcgattaagcggccgtttctgatcgaagcggagagatta
cgactgcagcatatgtgcgactaccctgattataaatataaaccgaaaaagaaagcaaag
ggcaaaaaatgcgactcgtcagagaactctacgttcagttatttgcacaacgatccagat
caatccatggaaattatagaaacgaatactgaagccttaaaggcggaagtaaaagtgtcc
agcaaacgtttgccaaagaaacgaaagctgtctcaaagcaagccttctttacctgaaatc
aaaccgactgtcgtggcctctatcaatcccattcaaaacaactcaggtaacagcgaaccg
caagccaaagaagtcaccgcaacaacgaacaatctgctgacggcggttaaagtcgagcca
cgagtgccacctctgccgattaccccagctacgatcgtgacggccgtgccttccaaacgt
ggcaggttcgaagtacataccccctccccttgcgatacgaaccagaggataggtttggtg
catggaactgtcttcaaaaccgtcaccgaaggaaatcgccagttcatcatcgtttccggt
gctaatgacgtcatttctgacgtcacaaactcgagcttggtgtcgacgcaacgaacatca
acaccttgccaacaaaaacaaataataaacgctaactttgtgccgataaccaacgactgc
ggacaagaaaaagtgtataacattgtaagagggtgcatacaagtggcgagtcaggaacca
acgaactctaccacacagaaacgcgtggagcctgatgtcccaactacatttgccaacatg
ggcgatgacttccggaacgaatacctgaaggaagatcactttattgaccaaatcacatta
agcagcgggatagcatatgctgatccttgcagaaggaaatcacatttcgagttctcagac
tacgacacagatgaagttaaacggatgattgaaagttccgacctagcgtggctcagggac
gacatctgctgtccgtaa
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