Ciona intestinalis (yellow sea squirt): 778791
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Entry
778791 CDS
T01056
Symbol
vdr-a
Name
(RefSeq) nuclear receptor
KO
K08539
vitamin D3 receptor
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cin01009
]
778791 (vdr-a)
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778791 (vdr-a)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cin03310
]
778791 (vdr-a)
Protein phosphatases and associated proteins [BR:
cin01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
778791 (vdr-a)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
778791 (vdr-a)
Nuclear receptors [BR:
cin03310
]
1. Thyroid hormone like
1I. Vitamin D3 like receptor
778791 (vdr-a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
778791
NCBI-ProteinID:
NP_001071847
Ensembl:
ENSCING00000020740
UniProt:
Q4H2N0
LinkDB
All DBs
Position
2:complement(5996281..6017705)
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AA seq
532 aa
AA seq
DB search
MMMTAGSLVNAEPFKHAHTTTSEPLCDMSYRFISSGSPLFRHSSSEAGNEVNDNNQPRHK
PALKRKSEESISDPSLAFHPAARGGFILNSFAYDAIQSMHRGQSNQSHDIVPNTLPKISD
PHRRSPETQPTRPPSGSVPHGSRSFFDNDEDDSWKVCGVCNDKATGYHFNALTCEGCKGF
FRRSVKNSKTFTCTYNNQCSITKSNRRQCQACRLRKCIQIGMKRECIMSPDEIQMKKTLV
LSNRIKRATMQWVPMELTNDQKILLDTICSAFIQSNNLPEKGVIRGGEEVRQDADKGSPC
SSPSSSSNNSNFLELIKRIANDIAARTPSNMTNPAHVVHFTDIMEFSIKEIIKFCKKIPT
FMDLDLKDQIALLKSGCTEILFIKANYTYDLEKKALTLGPDILYTRDSFLQGGMSVEYTD
NYLKFHEDLSALQLDDVEMSSLSAIALFSADRADLVDQQRVENQQEALALCLQAYSESSW
KVRNRFAIIMSFLPRLRTLNSLCTTAFSQVKKQFGEEIRPLVKEVQPTVENA
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgacagcgggttcattggtcaacgctgagcctttcaagcacgcccacacaacc
acaagcgaaccactgtgcgatatgtcgtacagatttatctcatccgggtcacccctgttc
cgacactccagcagcgaagctggaaatgaagtcaatgacaacaaccaaccaaggcataaa
ccagctttaaagagaaagtctgaagaaagtatttctgatccatcgctggcgttccatcca
gcagcaagaggaggtttcatcttaaactcatttgcatacgatgctatacaaagcatgcat
agaggccaaagcaaccaaagtcatgacattgtaccgaacactttaccaaagatatcagat
ccccatcgaaggtctcctgaaactcagcccacgaggccccctagtggtagcgtcccacac
ggaagtagatcgttctttgacaacgacgaggatgactcgtggaaagtttgtggcgtttgt
aacgacaaagctaccggttatcacttcaacgctcttacctgcgagggctgtaaaggtttc
ttcaggcggagcgttaaaaattccaagacttttacctgcacatacaacaaccaatgtagc
atcactaaaagcaacagaaggcagtgccaagcctgcaggttgagaaaatgcattcaaatt
ggaatgaagcgcgaatgtatcatgtcacctgatgaaatacagatgaaaaaaactttagtt
ttatcgaaccgcataaaacgtgcaacaatgcaatgggtgcctatggagctaaccaacgac
cagaagatacttctggacacaatttgttcggcgtttattcaaagcaacaacttacctgag
aaaggagtaatcaggggtggggaggaagtgcgacaggacgcagataaaggatctccatgt
tcatcaccctcgtcatccagcaataattcaaacttcttggaattgatcaagcgcatagca
aacgacatagcagcacgtacaccaagcaacatgacaaacccagcgcatgttgttcacttc
accgacattatggagttcagcatcaaagaaattatcaagttctgcaaaaaaatcccaact
tttatggacttggacctaaaagatcaaatcgcgttacttaaatcgggctgcactgagata
ttgtttattaaagccaactatacatatgatcttgagaaaaaagcgttaacccttgggcct
gatattctctataccagagattccttcttacaaggtggaatgtcggttgaatacacggat
aattacctcaagtttcatgaagatttgagcgctctacaactggatgatgttgaaatgtca
tctctgtctgcaatcgccctattttcggcagatcgagctgacttggtggaccagcagcgt
gtggaaaatcagcaagaagctttagctttatgtttacaagcttactctgaaagctcatgg
aaagttcggaatcgcttcgccatcatcatgtcgttcctaccaaggctgagaaccctcaac
agtttgtgtacgactgccttctcacaagtcaagaaacaatttggtgaagaaattcggcct
cttgttaaagaagttcaacccaccgtggaaaacgcttga
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