Clostridium intestinale: HZF06_05280
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Entry
HZF06_05280 CDS
T08934
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cint
Clostridium intestinale
Pathway
cint03410
Base excision repair
cint03430
Mismatch repair
cint03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cint00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HZF06_05280 (recJ)
03430 Mismatch repair
HZF06_05280 (recJ)
03440 Homologous recombination
HZF06_05280 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cint03400
]
HZF06_05280 (recJ)
DNA repair and recombination proteins [BR:
cint03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HZF06_05280 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HZF06_05280 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZF06_05280 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QLY81004
UniProt:
A0A7D7AFE3
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All DBs
Position
1131119..1132891
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AA seq
590 aa
AA seq
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MKEKWIMREGKKIEDSAYKKLGLNPIMGKILSNRGITTSTDIDLFINGSIEDLQDGFMMK
DMHLAIDIIKEYVLEKKPILIYGDYDCDGVSSTYILLKGLKECGAKVSYHIPHRENEGYG
MNEKRIGELYKEGYEIILTCDNGIAAFNEVEYAKSLGMKVVVTDHHDIPFVELEDGRNEE
KIPPADAIVNPKQKDCSYPFKNLCGAGIAYKFILCLCKELGIDTSRVDDLIEIAAIATVC
DVVDLVNENRIIVKEGLKRLNNTKNLGLKSLIKANNLQDKILNEYHLGFVIGPCINATGR
LETADLALELLMSDNEKASNELAQRLLTLNRERQEMTNVSLEKVIDLIKNNGYENDKVLF
VYEPSIHESLAGIVAGRIRERYNAPAIVMTSGKEMPKGSGRSIEKYNMHKELTKCSDLIE
KFGGHPMAAGLSVREENLPKLREALLNNCELTEEDMLPEIRIDMHLPFRNLNYALIDEIE
ALAPFGKGNPKPLFGEKDVHIKRIWFIGSERNSIRVSFSFDNTTINGIAFNIGDEFRKLL
NRHFGEVKALEIETSSYCNIKCALVYYPSINEYNGNKTIQAKIESLRFIK
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaatggataatgagagagggaaaaaagatagaagattctgcttataagaaa
ttaggattaaatcctattatggggaagattttatctaatagaggtataacaacaagcaca
gatattgatttatttataaatggttctatagaagatcttcaagatggatttatgatgaaa
gatatgcaccttgccattgatataataaaggaatatgtgcttgagaagaaacctatattg
atttatggcgattatgattgcgatggagtaagttccacatacatattattaaaaggacta
aaagagtgtggagctaaggtttcatatcacatacctcatagagaaaatgaaggttatggt
atgaatgaaaaaagaataggtgagctatataaagaaggttacgagataattttaacctgt
gataatggaatagcagcatttaatgaagtagagtatgcaaaaagtcttggaatgaaagtt
gtagttacagatcaccacgatataccttttgtggagttagaagatggaagaaatgaagaa
aaaatacctccagcagatgctatagtaaatccaaagcaaaaagattgctcctatcctttt
aaaaatctttgcggtgcaggaattgcatataaattcatattgtgtttgtgtaaggaatta
ggaatagatacttctagagttgatgatttaattgaaatagcagcaatagctacagtttgt
gatgttgttgatttagttaatgaaaatagaataatagtaaaagaaggcttaaaaagatta
aataacactaaaaatttgggtcttaagtcattaattaaagcaaataatcttcaagataaa
atattaaatgaatatcatttgggttttgttataggtccttgtataaatgccacaggaaga
ttagaaacagcagatttagcattggaattattaatgtcagataatgaaaaagcaagtaat
gaattggcacagagattattgactcttaatagagaaagacaagagatgacgaatgtaagt
ttagaaaaggttatagatcttattaaaaacaacggttatgaaaatgataaggttcttttt
gtatatgagcctagtatacatgaaagtttagctggaattgtagcaggaagaataagagag
agatataatgctccagctatagtaatgacttcaggaaaagagatgcctaaaggttcaggt
agaagtattgaaaaatataatatgcacaaagagttaacaaagtgtagcgaccttatcgaa
aaatttggtggacatcctatggcagcagggttatcagtaagagaggaaaacttacctaag
cttagagaagccttgcttaataattgtgaattaacggaagaagatatgctaccagaaata
agaatagatatgcacctcccttttagaaatttaaattatgcacttatagatgaaattgaa
gcattagctccttttgggaaaggaaatcctaagcccttatttggtgaaaaagatgttcac
ataaaaagaatctggtttataggaagtgaacgtaattcaataagagtttctttctctttt
gataatacaactataaatgggatagcatttaatattggagatgaatttagaaaactttta
aatagacactttggagaagttaaagcattagaaattgaaactagtagctattgcaatata
aagtgtgctttagtttattatccatctatcaatgaatataacggaaataaaactattcaa
gctaaaattgaatcactaagatttataaagtga
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