Chryseobacterium indologenes: CEQ15_15855
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Entry
CEQ15_15855 CDS
T04932
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cio
Chryseobacterium indologenes
Pathway
cio03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CEQ15_15855 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cio03400
]
CEQ15_15855 (ligD)
Enzymes [BR:
cio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CEQ15_15855 (ligD)
DNA repair and recombination proteins [BR:
cio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CEQ15_15855 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
mRNA_cap_enzyme
HD
Motif
Other DBs
NCBI-ProteinID:
ASE62859
LinkDB
All DBs
Position
3522098..3523975
Genome browser
AA seq
625 aa
AA seq
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MLAKLSGEAFNDKDWVFEIKWDGYRAIADLSHKQPLFYSRNGISFLSKFKIITTDFDRQK
YQMILDGEVVAYDHEGRPNFQLLQQIGDNPGLALVYQVFDILWLNGHSTEELPLLQRKEL
LKEALVETDVIKYCDHIPEKGIDFFEQMKKMQLEGMIAKRADSLYVENHRTSDWLKIKFT
NTEEAIICGFTEPRGSRKSFGALILGNYIDGRLTYCGHTGTGFNNNSLQELYERLHPLIM
KTSPFETIPKTNMPVTWIKPELVCEIKYSEITKDGIYRHPVFIAIREDKEPEDIVNTVHE
HTEKFKNMKAKTSSKKAETHEKEKEITLNKHIVKLTNQDKVYFPKDGITKGDVIAYYQSV
ATYILPHLKNRPLSLNRFPNGIEEQSFYQKDAGEHIPDWIKTTQVYSESNDKYIDYIYCN
DKATLAYLNNLGCIDLNPWNSSLPDLEHPDYLVLDLDPSKKNTFDDVIETALQVNEVLNS
IKIKGYCKTSGSTGIHIYIPMGGNYDFDQVKDFAHILMKQVNERLPKITTLERSLQKRDS
NKIYLDYLQNRTGQTLASAYSLRPKEGASVSMPLDWEELKQGIRPADYNIHNSLERIKEK
GDLFKPVLGKGIDMMKALELLQNID
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgctagctaaactttccggcgaagcctttaatgataaagactgggttttcgaaataaaa
tgggatggttaccgtgccattgcagacttaagccacaaacaaccactcttctactcccgc
aacggcatttcctttttatcaaaatttaaaatcattaccactgattttgaccggcagaaa
tatcaaatgatccttgatggggaggtggtggcctatgatcatgaagggcgaccaaatttc
cagcttttacagcaaattggggataatcccggcctggcacttgtttaccaggtttttgat
attttatggctaaacggccattctacggaagaacttcctttacttcaacgtaaagaatta
ttgaaagaagcactggtggaaaccgatgttattaaatattgtgatcatattcctgaaaaa
gggattgacttctttgaacaaatgaaaaaaatgcaactggaaggaatgattgccaagcgt
gcagacagcctgtatgtagaaaaccatagaaccagtgactggcttaaaattaaatttacc
aatacggaggaagccattatttgtggatttaccgagccacgaggttcaagaaaaagcttt
ggtgcgttgatcctggggaattatattgatggcagactgacctattgcggacataccgga
acaggattcaacaacaattcgcttcaggaactttatgagaggcttcatccactcatcatg
aaaacttcaccttttgaaaccattccgaaaaccaatatgcctgttacgtggattaaaccg
gaactggtttgcgaaataaaatactctgaaattacaaaagacggtatctacagacatcct
gtttttatagcgatacgagaggacaaagaaccggaggatattgtaaatactgtacatgaa
cacaccgaaaaatttaaaaatatgaaagctaaaacttcttcaaaaaaagcagaaactcat
gaaaaagagaaggaaatcactttaaacaaacatatcgtcaaactgaccaatcaggataaa
gtttatttcccaaaagacggtattacaaaaggagatgtaattgcctattatcaatcggtt
gctacctatattttaccgcatttgaaaaacagaccactttctctcaatcgttttcctaat
ggaattgaagaacaaagcttttatcaaaaagatgcgggtgagcatattccagactggatc
aaaacgactcaggtgtattccgaatcgaatgacaaatacattgattatatatattgtaat
gataaggctactttggcctatctgaataaccttggatgtattgatcttaacccctggaac
agctcgttgcctgatctggagcaccctgattatctcgttttagatttggatccgtcgaaa
aaaaacacatttgatgatgtgattgaaacagctctccaggtcaacgaagtattaaattct
ataaaaataaagggatactgcaaaacttccggaagcacaggaattcacatctatatcccg
atgggagggaattatgactttgaccaggtaaaagattttgcacacattctcatgaaacag
gtgaatgaaagacttccgaaaattacaacacttgaaaggagtttacagaaaagagactcc
aataaaatataccttgactacctccaaaacaggacaggacagacattagccagtgcttac
agtctaagacccaaagaaggggcttcggtttccatgcctttagattgggaagaacttaag
cagggtatcagacctgcagactataatattcataacagcctagaaagaattaaagagaaa
ggagatttattcaaacctgtgctgggaaagggcattgatatgatgaaagcattggaactg
cttcagaacattgattaa
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