Citrobacter sp. CFNIH10: C2U53_20520
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Entry
C2U53_20520 CDS
T05324
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir03030
DNA replication
cir03430
Mismatch repair
cir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2U53_20520 (holB)
03430 Mismatch repair
C2U53_20520 (holB)
03440 Homologous recombination
C2U53_20520 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cir03032
]
C2U53_20520 (holB)
03400 DNA repair and recombination proteins [BR:
cir03400
]
C2U53_20520 (holB)
Enzymes [BR:
cir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C2U53_20520 (holB)
DNA replication proteins [BR:
cir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C2U53_20520 (holB)
DNA repair and recombination proteins [BR:
cir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C2U53_20520 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
HolB_lid
EPF
Motif
Other DBs
NCBI-ProteinID:
AUZ66017
UniProt:
A0A3Q8DUD5
LinkDB
All DBs
Position
3466588..3467592
Genome browser
AA seq
334 aa
AA seq
DB search
MKWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPDGHKSCG
HCRGCQLMQAGTHPDYYSLFPEKGKSTLGIDAVREVSEKLYERARLGGAKVVWIPDAALM
TDAAANALLKTLEEPPAQTWFFLASREPVRLLATLRSRCRLHHLAPPSESYAVSWLAREV
TASQDALLTALRLSAGSPGAALTLLGSESWSQRDALCQALASSIPAGDWYSLLTVLNHEQ
APARLHWLATLMMDALKRQHGATVMTNADAGQLIATIAGQLSQTRIQAILNAICHCREQL
LNVTGINRELVLTDLLLQIEHYLQPGTVLPVPHL
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggtatccatggttacgacctgacttcgagaagctggtagcgagctatcaggcg
ggaaggggtcaccatgcgttactgattcaggccctaccggggatgggcgacgatgctttg
atctatgcgttgagccgctacttgctttgtcaacaaccggatggacataaaagctgtggc
cactgccgtggttgccagttgatgcaggcaggaacgcatccggactactattcactgttc
ccggaaaaagggaaaagcacgctgggcattgatgctgtgcgtgaagtgagtgaaaaactg
tatgagcgtgcgcgactgggcggagccaaagtggtctggatcccggatgcggcgctgatg
actgatgccgccgccaatgcgctgctcaaaacgctggaagaaccgcccgcgcaaacctgg
ttctttctcgccagccgtgaacccgtgaggttactggcaacgctgcgcagccggtgtcgt
ttacatcatctcgcgccgccgagtgaatcatacgcggtatcgtggcttgcacgagaagtg
acagcgtcacaagatgcgttattgactgcgctgcgcctgagtgccggttctccgggggcg
gcgctgacgctcctggggtccgaaagctggtcccaacgtgacgcgctgtgtcaggcgctg
gcgagcagcattcctgctggtgactggtactcattattgacggtgcttaaccatgaacag
gcgcctgccagactgcactggctggcgacgttaatgatggatgcgcttaaacgtcagcat
ggggccactgtgatgaccaacgcggatgccgggcaactgatcgccacgattgccggtcag
ctttctcagacgcgtattcaggcaatcctcaatgccatctgccactgccgcgaacaactg
cttaacgtgaccggaataaaccgtgaactggtgttaaccgatcttcttctgcaaatcgag
cattacctgcaaccaggcactgtgttgcctgttccccacctgtaa
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