Cellulomonas iranensis: LFM56_13865
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Entry
LFM56_13865 CDS
T07886
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cira
Cellulomonas iranensis
Pathway
cira03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cira00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LFM56_13865 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cira03400
]
LFM56_13865 (mfd)
Enzymes [BR:
cira01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LFM56_13865 (mfd)
DNA repair and recombination proteins [BR:
cira03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LFM56_13865 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UCN13964
LinkDB
All DBs
Position
complement(3097516..3101178)
Genome browser
AA seq
1220 aa
AA seq
DB search
MDLTGLLPALLADPAAAEAVASVRARGELDVVGPAGVRPPLLAALAGAHPTTGPAPDPAA
VRPLVVVTATGRDADELAGALRCYLPDDDVAVLPSWETLPHERLSPRADTVARRLAVFRR
LAHPDPEPGPAGPVRVLVMPVRALLQPVVDGLGELRPVEIRTGDRVDLDDVAQRLVDAAY
ARVDMVERRGEFAVRGGILDVFPPTEDHPLRIELWGEDVEEIRWFSVADQRSLEVADHGL
WAPPCREILLTDDVRERAAALRERLPGALDMLDKLAEGIAVEGMESLAPALVERMVPVLD
LVPDASLLVLVDPERVRRRAHDLVATTQEFLEAAWTSAAAGAATPLDLSAASFASFAEVR
ALAAVRGLGWWTLSGFTLDADAVTGDDATGHDDAPHDAPTAAPDARTLVVAAREVERYRG
EVARAVSDVRRLQQDGWRLVLATEGHGPAQRMVEQLRSADVPARLVATLDDEPEGGVVLV
VPAPAGPGFVHEQLRVALFSESDLTGRAGSSTRDMRRMPSRRRNVVDPLQLRPGDFVVHE
QHGVGRFVELVQRTIGTGASAATREYLVVEYASSKRGQPGDRLFVPTDQLDQVTKYVGGE
APSLNRMGGSDWQKTKGRARKAVKEIAAELIRLYSARMATPGHAFAPDTPWQRELEDAFA
YVETPDQLATIDEVKADMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT
TLLVQQHYDTFAERYAPYPVTVKALSRFQTPKESKEVVEGLSDGSVDVVIGTHRLITGEV
RFKDLGLVIIDEEQRFGVEHKETLKALRANVDVLAMSATPIPRTLEMAVTGIREMSTLAT
PPEERHPVLTFVGPYEEKQISAAIRRELLREGQVFYVHNKVESIERTASRLNELVPEARV
AVAHGKMGEHQLEQVIVDFWEKKFDVLVCTTIVETGLDISNANTLILERADRLGLSQLHQ
LRGRVGRGRERAYAYFLYPPEVPLTETAHDRLQTIAAHTDLGAGMAVAMKDLEIRGAGNL
LGGEQSGHIEGVGFDLYVRMVGEAVASFRGEEAEEQPDVTIELPVDAHIPHDYIAHERLR
LEAYRKIAAALDETTLREVRAELTDRYGAVPPAVDNLFEVAQFRLHVRAAGIADVTAQGR
FVRFAPVELPESAQLRLKRLYPGSVVKPAVRTVLVPFPTTARIGGKPLHGREVMTWARQF
IDAVVRGDVSVAASVGTTGR
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggacctgaccggcctcctgcccgccctgctcgccgaccccgcggccgccgaggccgtc
gcgtccgtccgtgcgcgcggcgagctcgacgtcgtcggtcccgccggcgtgcgtcccccg
ctcctcgcggcgctcgcgggcgcgcacccgacgaccggccccgcgcccgaccccgccgcg
gtgcgtccgctggtcgtcgtcaccgcgacgggccgcgacgccgacgagctcgcgggcgcg
ctgcgctgctacctcccggacgacgacgtcgcggtgctgccgagctgggagacgctcccg
cacgagcggctcagcccgcgcgccgacacggtcgcgcggcggctcgcggtgttccgccgc
ctcgcgcacccggaccccgagcccgggcccgccggaccggtccgtgtcctggtcatgccc
gtgcgcgcgctgctccagccggtcgtcgacggcctgggcgagctgcgccccgtcgagatc
cgcacgggcgaccgcgtcgacctcgacgacgtcgcgcagcgcctcgtcgacgccgcgtac
gcgcgcgtcgacatggtcgagcggcgcggcgagttcgccgtgcgcggcggcatcctcgac
gtcttcccgcccaccgaggaccacccgctgcgcatcgagctgtggggcgaggacgtcgag
gagatccgctggttctcggtcgccgaccagcgctcgctcgaggtcgccgaccacggcctg
tgggcgccgccgtgccgcgagatcctgctcaccgacgacgtgcgcgagcgcgccgccgcg
ctgcgcgagcgcctgcccggtgcgctcgacatgctcgacaagctcgccgagggcatcgcg
gtcgagggcatggagtcgctcgcacccgcgctcgtcgagcgcatggtccccgtgctcgac
ctcgtgccggacgcgtcgctgctcgtgctcgtcgaccccgagcgcgtgcggcgccgcgcg
cacgacctggtggccacgacgcaggagttcctcgaggccgcgtggacgtcggccgccgcc
ggcgccgcgacgccgctcgacctgtcggccgcgtcgttcgcctcgttcgccgaggtccgc
gcgctcgccgcggtgcgcggcctgggctggtggacgctgtcgggcttcacgctcgacgcc
gacgcggtcacgggcgacgacgcgacgggccacgacgacgcgccgcacgacgcacccacc
gccgcgcccgacgcgcggacgctcgtggtcgcggcgcgcgaggtcgagcggtaccgcggc
gaggtcgcgcgcgccgtgtcggacgtgcggcgcctgcagcaggacggctggcggctcgtg
ctcgcgaccgaggggcacggcccggcgcagcgcatggtcgagcagctgcggtccgccgac
gtgcccgcgcggctcgtcgcgaccctcgacgacgagcccgagggcggcgtcgtgctcgtc
gtccccgcccccgcgggccccggtttcgtgcacgagcagctgcgcgtcgcgctgttcagc
gagtccgacctcacgggccgcgccggctcgagcacgcgcgacatgcggcgcatgccgagc
cgtcgccgcaacgtcgtggaccccctgcagctgcggccgggcgacttcgtcgtgcacgag
cagcacggcgtcgggcggttcgtcgagctcgtgcagcgcacgatcggcacgggtgcgagc
gcggcgacgcgcgagtacctggtcgtcgagtacgcgtcgtcgaagcgcgggcagcccggc
gaccggctgttcgtgccgaccgaccagctcgaccaggtgacgaagtacgtgggcggcgag
gccccgtcgctcaaccgcatgggcgggtccgactggcagaagaccaagggccgcgcgcgc
aaggccgtcaaggagatcgccgccgagctcatccggctgtactcggcgcggatggccacg
ccggggcacgcgttcgccccggacacgccgtggcagcgcgagctcgaggacgcgttcgcg
tacgtcgagacgcccgaccagctcgcgacgatcgacgaggtcaaggccgacatggagaag
acggtccccatggaccggctgatctgcggcgacgtcggctacggcaagaccgagatcgcg
gtgcgggcggcgttcaaggccgtgcaggacggcaagcaggtcgcggtcctggtgccgacg
accctgctggtccagcagcactacgacacgttcgccgagcgctacgcgccgtacccggtg
acggtcaaggcgctgtcgcgcttccagacgccgaaggagtccaaggaggtcgtcgagggg
ctgtcggacgggtccgtcgacgtcgtcatcggcacgcaccggctcatcacgggcgaggtg
cggttcaaggacctcggcctggtcatcatcgacgaggagcagcggttcggcgtcgagcac
aaggagacgctcaaggcgctgcgcgccaacgtcgacgtgctcgcgatgagcgcgacgccg
atcccgcgcacgctcgagatggcggtcaccggcatccgcgagatgtcgacgctggcgacg
ccgcccgaggagcggcaccccgtgctgacgttcgtcggcccgtacgaggagaagcagatc
tccgcggcgatccgccgcgagctgctgcgcgagggccaggtcttctacgtgcacaacaag
gtcgagtcgatcgagcgcaccgcgtcgcggctcaacgagctcgtgcccgaggcccgcgtc
gcggtcgcgcacggcaagatgggcgagcaccagctcgagcaggtgatcgtcgacttctgg
gagaagaagttcgacgtgctggtctgcacgaccatcgtggagacggggctcgacatctcg
aacgcgaacaccctgatcctcgagcgcgcggaccggctggggctgtcgcagctgcaccag
ctgcgcgggcgcgtggggcgcggccgcgagcgcgcgtacgcgtacttcctgtacccgccc
gaggtgccgctcaccgagacggcgcacgaccggctccagaccatcgcggcgcacaccgac
ctcggtgccggcatggccgtggccatgaaggacctcgagatccgcggcgcgggcaacctg
ctgggtggcgagcagtcgggccacatcgagggcgtcgggttcgacctgtacgtgcggatg
gtcggcgaggcggtcgcgtcgttccgcggcgaggaggccgaggagcagcccgacgtcacg
atcgagctgccggtcgacgcgcacatcccgcacgactacatcgcgcacgagcggctgcgc
ctcgaggcgtaccgcaagatcgccgcggcgctcgacgagacgacgctccgcgaggtccgc
gccgagctcacggaccggtacggggccgtgccgccggcggtcgacaacctgttcgaggtc
gcgcagttccggctgcacgtgcgggccgcgggcatcgcggacgtcaccgcccagggcagg
ttcgtgcggttcgcaccggtcgagctgcccgagtcggcgcagctgcggctcaagcggctg
taccccggctcggtcgtcaagcccgcggtgcgcacggtcctcgtcccgttccccacgacc
gcgcggatcggcggcaagccgctgcacggccgcgaggtcatgacgtgggcgcggcagttc
atcgacgcggtcgtgcgcggcgacgtgtcggtcgcggcgtcggtcggcacgaccgggcgc
tga
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